Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq343 574 7e-159 seq119 320 2e-82 seq205 100 4e-16 >seq343 Length=103200 Score = 574 bits (636), Expect = 7e-159 Identities = 1146/1679 (68%), Gaps = 39/1679 (2%) Strand=Plus/Plus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 ||||||||||| | | | ||||||||||| |||| || ||||| |||||||| || Sbjct 5020 GTAAACTGAATAGCATTTGCAGCGGGTTTTGTTCGTAAGTAATACATTCCAGTTTTCAGT 5079 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 |||| |||||||||| ||||| ||| || | ||| |||| | || || |||| | Sbjct 5080 CCCATTTTCCATCCGTAAAAATGAATGGACGTTAATTTCCCATAATTGGGTTCAGCTACA 5139 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 |||||||| | |||||||||||| || || |||||||| | ||| || | ||||| || Sbjct 5140 TGAATATTAAACGACTGACTTTGGTCTATAAAAGCTCCACGATCGGCAGACATTTGAAT- 5198 Query 76962 ATGGTCTTTTGA--GGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | |||| | ||||||||||| ||||| | | | ||| ||||||||||||| Sbjct 5199 -TTGTGTCTTGACGGAAATTTCCCAAACCGTTTTATATATATTTTTTATATCATCTGGAA 5257 Query 77020 GGTTTG-----TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATC 77074 |||| || | || || |||||| || || |||||| | ||||| ||||| || Sbjct 5258 --TTTGCTCAATAGTCTGTATTGAACCATTATTTGCAATAATTTTGTTCTTCATATCGTC 5315 Query 77075 ATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTC 77134 || ||| || | || || ||| | | | ||||| ||||||| | ||||||||| Sbjct 5316 ATCCCATAAACCACGTTCAGTCAAATCCTTGATAAGATGGTGATTAACAACTTGAAATTC 5375 Query 77135 TCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT-TCATTGT 77193 ||| | || | |||| | |||| |||||| || || |||| || || | ||||| | Sbjct 5376 ACCACTGAGAACACGACGATTATAAACATTACTTGTGTAAGGTT-CAAAGCTCTCATTAT 5434 Query 77194 TTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGA 77253 | |||||||| |||||||| || || || ||||| ||||| | || | ||||| || Sbjct 5435 TACCCAAAATCTGAGCAGTTGATGCTGTCGGCATTGGTGCAATTAAGAGTGAATTTCGGA 5494 Query 77254 GACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAA 77313 ||||| || | ||||| ||||||||| || ||||||||| | ||| | || Sbjct 5495 GACCAAACTTTTTAATTTTTTCTTTTAGAGCTTCCCAATCCCACAAATCGGTGGGAGTCT 5554 Query 77314 CATCCCAAAGATCGTATTGTAGAATTCCGTT--ACTAGCATATGATCCATTATATGTTTC 77371 |||||| | ||| ||||||| | || || || | | | |||||| || || || Sbjct 5555 TATCCCACATATCATATTGTAATACACCTTTTGAC-ACCGGA-CATCCATCGTAAGTCTC 5612 Query 77372 ATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGT 77431 ||| ||||| | ||| |||| |||||| || | |||||||| || ||||||||||| Sbjct 5613 ATATGGTCCCAATTGTTCTGCTAATTCACAGCTGGACTCCAATGCACCATAATAAATTGT 5672 Query 77432 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGG-ATAATGTAAAA 77490 ||| || || | | ||| | || || ||||| || ||| | || || | | | Sbjct 5673 TTCAAATATTTGTTGATTTAAATTTTTCGCTTCGTTAGATTCATATGGCATTCT-CATCA 5731 Query 77491 GAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGG 77550 |||||| |||||||| ||||| ||||||||||| |||||||| | |||||| || | Sbjct 5732 AAATAAAAGCATCTGCCAATCCTTGAACTCCAATTCCAATAGGACGATGTCTAAAGTTTG 5791 Query 77551 AAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAA 77610 | |||||||||| || ||||| ||||| | || ||||||||||| | ||| || Sbjct 5792 ACCGTTTAGCTTCTTCAACGGGATAGTAATTTACGTTAATAATTTTATTCAAATTCCTTG 5851 Query 77611 CAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA---TCTTCCA---TCTATAA 77664 |||| ||| || ||||| | ||| |||| ||| | ||||| | | | | | Sbjct 5852 TGACTATTTTTGTAACTTCCTTCAATTTGTGAAAGTCATATTCTCTTCGATTTTGTTTGA 5911 Query 77665 CAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCAT 77724 ||||||| || ||||| || ||||||| |||||||||||| || |||| | | || Sbjct 5912 CAAACATATTTAAAGCAATTGATGCTAAATTACAAACTGCAACTTCATCCTTACTTGAAT 5971 Query 77725 ATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGC 77784 |||||| ||| || ||||||| ||| ||| || || || ||||| ||||| || Sbjct 5972 ATTGTACTATTTCCGTACATAAATTCGAACAACGTATTGTCCCAAGATTCTGTTGATTTG 6031 Query 77785 TCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATT 77844 || |||||||| |||||||| || ||| | || || || ||||| | || | | Sbjct 6032 ATTTCCGGTTGCATGAATCCTTATACAGCATATAAGGTGTACCAGTTTCTACTTGAGCCT 6091 Query 77845 CGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTC--TCTCT 77902 | || || | ||| | || || |||| | || ||| | || ||| Sbjct 6092 CAATGATTGCGAACCACAAATCTTGTGCCTTTA--CTTGACGAATATACCTTCCTTCTGC 6149 Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 |||||| ||| || ||||||| || || | ||| | || || | Sbjct 6150 TTCATAGCCTTCATAAAGTTTCACAAATTCCTCACCGTACGATTCAAAAAGACCGGGACT 6209 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022 ||| || ||||| |||||||| ||| | | ||| || ||| || | ||| Sbjct 6210 ACTATTAGGACACATTAATGACCACATTTCATTGTTTTCAACCCGACGCATGAACAAATC 6269 Query 78023 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTT 78082 || ||||| | ||| ||| | |||| | ||| |||||| ||||| ||||| || Sbjct 6270 TGGAATCCACAATGCATAAAACATGTCTCTAGCTCTGACTTCTTCTTTTCCAGTATTTTT 6329 Query 78083 TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAAC 78142 || | ||| ||||| || | ||||||| |||||| ||||| | ||||||||| | | Sbjct 6330 CTTTAAATCCAGAAATTCAAAAATATCACCATGCCAAGGTTCCAAATATATTGCAAACGC 6389 Query 78143 TCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAA 78202 || || |||||||| || || || || | ||| | ||||| ||||| || ||||| || Sbjct 6390 GCCTGGACGTTTATTTCCACCTTGGTCAACATAACGTGCGGTATTATTGTATACTCTTAA 6449 Query 78203 CATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCG 78262 |||||||| || || || || | |||||||| |||| ||||| |||| |||| || Sbjct 6450 CATTGGAACAAGGCCATTTGAAATCCCATTTGTACCAGCTATATATGTTCCTTTTGCTCG 6509 Query 78263 AATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAAC 78318 ||| |||| | || || ||||| ||||| || ||||| ||||| Sbjct 6510 AAT----GCAATGAACATTAACACCAATTCCACCTGCTGATTTGCTTATTAATGCGCATT 6565 Query 78319 GTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCA-TGTTAAGAAGAAAACAG 78377 |||| |||||||| || |||||||| ||| ||||| || || || ||| || || Sbjct 6566 GTTTTAATGTATCATAAATACCCTCAATAGAATCATCTGACATTGATAGTAAG-AAGCAT 6624 Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAA 78436 || | |||| | | ||| | || ||||| || ||||||||||||||||| Sbjct 6625 GAGGATAATTGAGGGCGTGGCGTTGCAGCTGCGAATAAAGTTGGAGATGCATGCGTAAA 6683 >seq119 Length=197918 Score = 320 bits (354), Expect = 2e-82 Identities = 584/838 (70%), Gaps = 23/838 (3%) Strand=Plus/Plus Query 47834 AGACATAACTCCCATTTTTTGATATTCACCCACACGTTTC--TCGAAAAAATTAGTTTTG 47891 |||||||||||| | |||||||||||||| || |||| ||||| || || || ||| Sbjct 167142 AGACATAACTCCACTCTTTTGATATTCACCAACC--TTTCGTTCGAAGAAGTTTGTCTTG 167199 Query 47892 CCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttA 47951 || || | ||| ||| ||||||||| |||||||| | |||||| | ||| | | Sbjct 167200 CCCTCAAGTGAAATAAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCA 167259 Query 47952 AATCCTAATTCTGA-AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTC 48010 | ||| ||||| ||| | | ||| ||||| |||||||| || |||| | || Sbjct 167260 AGTCCCAATTCACCCAATAAATG-ATCAGCAACAAATTCTATGTACTGAGTCATTAAATC 167318 Query 48011 ACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGT 48070 ||||||||| || | | |||||||| || || || || | ||| || | || || | Sbjct 167319 ACAATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTT 167378 Query 48071 GACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAA--CAA-ATG 48127 ||||| || || || ||| |||||| ||||||| | | ||| ||| Sbjct 167379 TACAGCCTCTGTGATAATTTCAACTACTCTTTCCT---TTGGTGGCTTCTGTTCAAGATG 167435 Query 48128 TTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTT 48187 ||| ||||||| |||||||| |||| |||||| ||||| ||||| ||| | ||| || Sbjct 167436 TTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATT 167495 Query 48188 AGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGA 48247 |||||||| | || ||||||| ||| | || || | ||||||||| || || |||| Sbjct 167496 TGAAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGC-AAAGC 167554 Query 48248 T-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG 48306 | ||| |||||| || ||||| || || ||||| || ||| || || || | | | Sbjct 167555 TACCACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTG 167614 Query 48307 CTTCGTTG-TG--TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTG 48363 | | ||| || |||||| | ||||| |||||||||||||| ||||| || | || Sbjct 167615 CATTCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTG 167674 Query 48364 TTTCTATAGCATTAAAGAGAAAGttttttt-CATTGCTATCTTTAACGTAAGTATCTATT 48422 | || || ||||| || | |||| | | |||| |||| ||| ||||| || ||| Sbjct 167675 TCTCAATTGCATTGAATAAGAAGTCACGCTGCTTTGC-ATCTCTAATATAAGTTTCAATT 167733 Query 48423 AAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACAT 48482 || | ||||| || ||||| | |||||| || || || || ||||| || || || Sbjct 167734 AATATTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAAT 167793 Query 48483 CTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATT 48542 | ||||||| | || || ||| || || || ||| |||||||||||||| || Sbjct 167794 CGAGCTTCTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATG 167853 Query 48543 CCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGA--AG 48600 |||||| |||||||| || ||||||||||| ||||||| || || | Sbjct 167854 CCATCAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTC--TGAATCCT 167911 Query 48601 TCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 48658 | || || |||||||| | ||||||||||||| ||| ||||| || ||||||| || Sbjct 167912 TGAGATTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969 >seq205 Length=143123 Score = 100 bits (110), Expect = 4e-16 Identities = 123/166 (74%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||| |||| ||| || |||||||||| ||| | |||||| ||||| || | || || Sbjct 86382 AAAGTCACGATGTAGTCCTTCATCTCGTGAAATGAGTTCGTTTGAAAAAGTCAATCCAGG 86323 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG--AAAAGAATATG 48263 ||||||||| || ||||| ||| |||| ||||| || |||| | | | |||| ||||| Sbjct 86322 CATTAGTCCTCGCTTTTTTAGCTAAAAGATTGCTGC-AAAGCTTCTGCTAAAAAAATATA 86264 Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTT 48309 |||||| || |||||||| ||| ||| || || | ||| ||| Sbjct 86263 ATTTCTACAGCGGCAAATGCAATAATTCTTTCACCCAATCTGCCTT 86218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694442815556000