Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq343 545 3e-150 seq119 316 3e-81 seq205 102 1e-16 >seq343 Length=103200 Score = 545 bits (604), Expect = 3e-150 Identities = 1091/1599 (68%), Gaps = 32/1599 (2%) Strand=Plus/Plus Query 75373 CAAC-GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431 |||| || |||||||| | | | || |||||||| |||| || ||||| ||||||| Sbjct 5015 CAACAGTAAACTGAATAGCATTTGCAGCGGGTTTTGTTCGTAAGTAATACATTCCAGTTT 5074 Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491 | || |||| |||||||||| ||||| ||| |||| ||| |||| | || || | Sbjct 5075 TCAGTCCCATTTTCCATCCGTAAAAATGAATGGACGTTAATTTCCCATAATTGGGTTCAG 5134 Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTT 75551 ||| ||||||||| | |||||||||||| || || |||||||| | ||| || | ||||| Sbjct 5135 CTACATGAATATTAAACGACTGACTTTGGTCTATAAAAGCTCCACGATCGGCAGACATTT 5194 Query 75552 TTATAATGGTCTTTTGA--GGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATC 75609 || | || | |||| | ||||||||||| ||||| | | | ||| |||||||| Sbjct 5195 GAAT--TTGTGTCTTGACGGAAATTTCCCAAACCGTTTTATATATATTTTTTATATCATC 5252 Query 75610 TGGAAGATTTG-----TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATC 75664 |||| ||||| || | || || || || || | |||||| | ||||| || Sbjct 5253 TGGA--ATTTGCTCAATAGTCTGTATTGAACCATTATTTGCAATAATTTTGTTCTTCATA 5310 Query 75665 TCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGA 75724 || |||| ||| || | || || ||| | | | ||||| ||||||||| |||| Sbjct 5311 TCGTCATCCCATAAACCACGTTCAGTCAAATCCTTGATAAGATGGTGATTAACAACTTGA 5370 Query 75725 AATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT-TC 75783 ||||| ||| | || | ||| | |||| |||||| || || |||| || || | || Sbjct 5371 AATTCACCACTGAGAACACGACGATTATAAACATTACTTGTGTAAGGTT-CAAAGCTCTC 5429 Query 75784 ATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATT 75843 ||| || |||||||| ||||||||||| || |||||||| ||||| | || | ||| Sbjct 5430 ATTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCATTGGTGCAATTAAGAGTGAATT 5489 Query 75844 TCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGG 75903 || ||||||| || | ||||| ||||||||| || ||||||||| | ||| | || Sbjct 5490 TCGGAGACCAAACTTTTTAATTTTTTCTTTTAGAGCTTCCCAATCCCACAAATCGGTGGG 5549 Query 75904 TACAACATCCCAGAGATCGTATTGTAGAATTCC-GTTGCTAGCATATGATCCATTATATG 75962 |||||| | ||| ||||||| | || ||| | | | |||||| || | Sbjct 5550 AGTCTTATCCCACATATCATATTGTAATACACCTTTTGACACCGGA-CATCCATCGTAAG 5608 Query 75963 TTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAA 76022 | || || | || | ||| |||| ||| || || | ||| || ||||| ||||||| Sbjct 5609 TCTCATATGGTCCCAATTGTTCTGCTAATTCACAGCTGGACTCCAATGCACCATAATAAA 5668 Query 76023 TTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGG-ATAATGT 76081 ||||||| || || | | ||| | || || |||||| | ||| | || || | Sbjct 5669 TTGTTTCAAATATTTGTTGATTTAAATTTTTCGCTTCGTTAGATTCATATGGCATTCT-C 5727 Query 76082 AAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTA 76141 | | |||||| |||||||| | ||| ||||||||||| |||||||| | |||||| Sbjct 5728 ATCAAAATAAAAGCATCTGCCAATCCTTGAACTCCAATTCCAATAGGACGATGTCTAAAG 5787 Query 76142 TTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTT 76201 || || || ||||||| || || || ||||| | | ||||||||||| | ||| Sbjct 5788 TTTGACCGTTTAGCTTCTTCAACGGGATAGTAATTTACGTTAATAATTTTATTCAAATTC 5847 Query 76202 CTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATT---TTCCA---TCT 76255 || |||| ||| || ||||| | |||| |||| ||| ||| ||| | | | Sbjct 5848 CTTGTGACTATTTTTGTAACTTCCTTCAATTTGTGAAAGTCATATTCTCTTCGATTTTGT 5907 Query 76256 ATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTG 76315 | ||||||||||| | ||| || ||||||| ||||||||| || || |||| | | Sbjct 5908 TTGACAAACATATTTAAAGCAATTGATGCTAAATTACAAACTGCAACTTCATCCTTACTT 5967 Query 76316 GCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGG 76375 | |||||||| ||| ||||| |||| ||| ||| || || |||||||| ||||| Sbjct 5968 GAATATTGTACTATTTCCGTACATAAATTCGAACAACGTATTGTCCCAAGATTCTGTTGA 6027 Query 76376 TTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGT 76435 || || ||| ||||| |||||||| || | | | || || |||||||| | || Sbjct 6028 TTTGATTTCCGGTTGCATGAATCCTTATACAGCATATAAGGTGTACCAGTTTCTACTTGA 6087 Query 76436 GATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTC--T 76493 | || || || | ||| | || || |||| | || ||| |||| | Sbjct 6088 GCCTCAATGATTGCGAACCACAAATCTTGTGCCTTTA--CTTGACGAATATACCTTCCTT 6145 Query 76494 CTCTTTCATATTGTGTATATAACCGTT--CAAATTCATCTCCCCAAACATCATCCAAACC 76551 || |||||| | | |||| || ||||||| || || | ||| | ||| Sbjct 6146 CTGCTTCATA--GCCTTCATAAAGTTTCACAAATTCCTCACCGTACGATTCAAAAAGACC 6203 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 |||| ||| |||||||| ||||||||| ||| | | |||||| ||| || Sbjct 6204 GGGACTACTATTAGGACACATTAATGACCACATTTCATTGTTTTCAACCCGACGCATGAA 6263 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 | ||| || ||||| | ||| ||| | |||| | ||| |||||| ||||| || Sbjct 6264 CAAATCTGGAATCCACAATGCATAAAACATGTCTCTAGCTCTGACTTCTTCTTTTCCAGT 6323 Query 76672 ATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 ||| || || | ||| || || || | ||||||| |||||| ||||| | |||||| || Sbjct 6324 ATTTTTCTTTAAATCCAGAAATTCAAAAATATCACCATGCCAAGGTTCCAAATATATTGC 6383 Query 76732 CATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAAC 76791 | | || || |||||||| || || || || | ||| | || || ||||| || || Sbjct 6384 AAACGCGCCTGGACGTTTATTTCCACCTTGGTCAACATAACGTGCGGTATTATTGTATAC 6443 Query 76792 TCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACA 76851 ||| |||||||||| || ||| || || | |||||||| |||| ||||| |||| Sbjct 6444 TCTTAACATTGGAACAAGGCCATTTGAAATCCCATTTGTACCAGCTATATATGTTCCTTT 6503 Query 76852 TGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 76911 ||| ||||| | || | | || ||||| ||||| ||| |||| || || Sbjct 6504 TGCTCGAATGCAATGAACATTAACACCAATTCCACCTGCTGATTTGCTTATTAATGCGCA 6563 Query 76912 GCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATC 76950 |||| ||||| ||||| || ||||| ||| |||||| Sbjct 6564 TTGTTTTAATGTATCATAAATACCCTCAATAGAATCATC 6602 >seq119 Length=197918 Score = 316 bits (350), Expect = 3e-81 Identities = 583/839 (69%), Gaps = 27/839 (3%) Strand=Plus/Plus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTC--TCGAAAAAATTAGTTTTGC 46381 ||||||||||| | ||||| |||||||| || |||| ||||| || || || |||| Sbjct 167143 GACATAACTCCACTCTTTTGATATTCACCAACC--TTTCGTTCGAAGAAGTTTGTCTTGC 167200 Query 46382 CTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAA 46441 | || | ||| ||| ||||||||| || ||||| | |||||| | ||| | || Sbjct 167201 CCTCAAGTGAAATAAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAA 167260 Query 46442 ATCCTAATTCTGA-AATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCA 46500 ||| ||||| ||| | | ||| ||||| |||||||| ||| |||| | ||| Sbjct 167261 GTCCCAATTCACCCAATAAATG-ATCAGCAACAAATTCTATGTACTGAGTCATTAAATCA 167319 Query 46501 CAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTG 46560 |||||||| || | | || || || || || || || | ||| || | ||||| | Sbjct 167320 CAATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTT 167379 Query 46561 ACAGCATCCG--ATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCA--TCAA-AT 46615 ||||| || | ||| | || | |||| |||||| ||||||| | | |||| || Sbjct 167380 ACAGCCTCTGTGATAATTTCAAC--TACTCTTTCCT---TTGGTGGCTTCTGTTCAAGAT 167434 Query 46616 GTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGT 46675 |||| ||||||| |||||||| |||| |||||| ||||| ||||| ||| | ||| | Sbjct 167435 GTTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCAT 167494 Query 46676 TAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAG 46735 | |||||||| | ||| ||||||| ||| | ||| || | |||||||||||| || |||| Sbjct 167495 TTGAAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGC-AAAG 167553 Query 46736 AT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG 46794 | ||| |||||| || ||||| ||||| || || || | || || || || | | Sbjct 167554 CTACCACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTT 167613 Query 46795 GCA-TCATTATG--AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATT 46851 ||| || | || ||||| || |||||| |||||||| ||||| ||||| || | | Sbjct 167614 GCATTCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGT 167673 Query 46852 GTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATT 46911 || || || ||||| || | |||| | | |||| ||| ||| || || ||| Sbjct 167674 GTCTCAATTGCATTGAATAAGAAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATT 167733 Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACAT 46971 || | ||||| || || || | ||||| ||||| || || ||||| || || || Sbjct 167734 AATATTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAAT 167793 Query 46972 CTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT 47031 | ||||| | || || || || || || || ||| ||||||||||| || || Sbjct 167794 CGAGCTTCTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATG 167853 Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAAT---ATTTTTCATCGGTA 47088 |||||| |||||||| || || |||||||| ||||||| | | ||| Sbjct 167854 CCATCAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATC---C 167910 Query 47089 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAA 47147 | || || |||||||| | ||||||||||||| ||| ||||| || |||||||||| Sbjct 167911 TTGAGATTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969 >seq205 Length=143123 Score = 102 bits (112), Expect = 1e-16 Identities = 117/155 (75%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 ||| |||| ||| || |||||||||| ||| | |||||| ||||| || | ||||| Sbjct 86382 AAAGTCACGATGTAGTCCTTCATCTCGTGAAATGAGTTCGTTTGAAAAAGTCAATCCAGG 86323 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG--AAAAGAATATG 46752 ||||||||| |||||||| ||| |||| || || || |||| | | | |||| ||||| Sbjct 86322 CATTAGTCCTCGCTTTTTTAGCTAAAAGATTGCTGC-AAAGCTTCTGCTAAAAAAATATA 86264 Query 46753 CCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC 46787 ||||||||| || ||||| | || ||| || || Sbjct 86263 ATTTCTACAGCGGCAAATGCAATAATTCTTTCACC 86229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712702473528000