Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq442 163 6e-35 seq296 161 2e-34 seq10 136 8e-27 seq782 104 5e-17 seq17255 95.1 3e-14 seq10680 91.5 3e-13 >seq442 Length=86436 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| | || | || | || |||||||||||||||||||| Sbjct 24989 ACCACCACGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCT 25048 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| |||| |||||| || |||||||||||||| ||||| || || Sbjct 25049 CAATGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGG 25108 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| ||||| ||||| || || || | || || ||||| || | ||||| Sbjct 25109 AATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGAC 25168 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||| || || |||||||||||||| || || ||||| |||||||| Sbjct 25169 TTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 25216 >seq296 Length=113092 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| |||| ||| || || |||||| ||||| |||||||| Sbjct 112857 CCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTC 112916 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || ||||| || | |||||| || || ||||||||||| |||||||| ||| Sbjct 112917 AATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGA 112976 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||||||||||||||| ||||| | || || ||||| || | || ||| Sbjct 112977 ATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAACT 113036 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| || || || ||||||||||| ||||| || ||||| Sbjct 113037 TCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083 >seq10 Length=552578 Score = 136 bits (150), Expect = 8e-27 Identities = 273/403 (68%), Gaps = 4/403 (1%) Strand=Plus/Plus Query 43984 CAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACT 44043 || || || ||||| || ||||| ||||| || ||| | ||| ||||| || | ||| Sbjct 300333 CAGGCATCTACATCAGAATTGTATGGAAAAGTAGTGGAAACTCCACAAACTGAGAAGACA 300392 Query 44044 CCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAA 44103 || || ||||| | |||||||||| || || || || |||| || ||||| || | Sbjct 300393 CCATTCTATCCAAGAAGTCCATATGCAGTAGCTAAACTTTATGGATACTGGATCATTATA 300452 Query 44104 AATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGT 44163 ||||| || || | || || |||| | |||||| |||| || ||||| ||| Sbjct 300453 AATTACCGTGAAGCTTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATGAATCG 300512 Query 44164 CCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATATTT-- 44221 || | ||||| | | ||||| || | ||||| || | | || || || |||| Sbjct 300513 CCAAGGAGAGGAGAAAATTTCGTTACAAGGAAAATTACCCGATCAGTCGCTAAAATTTCA 300572 Query 44222 TCAACGGGACAGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGAT 44281 | || | ||| | ||| | || | || || || | ||||| ||| | |||||||| Sbjct 300573 TTAAAGCAACA--AGAATTCTTGGAACTTGGTAATCTTGACTCAAAACGTGATTGGGGTC 300630 Query 44282 ATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAACAAGACAGGTCAGACGACT 44341 |||| ||| || || ||||| |||||| ||||||||||||| || | |||| || | Sbjct 300631 ATGCAAAGGACTACGTGGAAGCTATGTGGATGATGTTGCAACAGGATCAGCCAGAAGATT 300690 Query 44342 ACGTTATTGCAACTGGAAAGACGACGAGTGTCCGTGACTTTGT 44384 || ||||| || || | || ||||| || || ||||| Sbjct 300691 TTGTAATTGCTACAGGCGAAACTCGCAGTGTACGAGAATTTGT 300733 >seq782 Length=54866 Score = 104 bits (114), Expect = 5e-17 Identities = 252/378 (67%), Gaps = 8/378 (2%) Strand=Plus/Minus Query 273609 GGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGG 273668 |||| || || ||||| || || |||||||| || ||||| || |||| | || Sbjct 42941 GGAATTTTTGTTGACCATCCAGTACCAATACCTTCAGCGCCATTTACAAGAACCATTGGA 42882 Query 273669 ATAATTGGGACATAATATTCGGGCTCAATT---TTATCACCATCGTCGTAAAGGTACTTC 273725 |||||||| ||||||||||| |||||||| | || | || || ||| || | Sbjct 42881 ATAATTGGAACATAATATTCAGGCTCAATACGCTGATTGTCTTCATCCAAAAAGT---TA 42825 Query 273726 AACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGA-GGATTCAGTTTCGTGAA 273784 | ||||| |||||| | ||| | | || | || | || || ||||||| Sbjct 42824 AGCAAAGGATCATCATGTGGATGGAAGATGTGACGAG-CTAATGGCGAAAGCATCGTGAA 42766 Query 273785 AATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTC 273844 ||| || | | ||| ||| || || || || | | || |||||||||||| | Sbjct 42765 AATATAACGAGGACTTGCAGAATCTTTTCCTCCCGTTAAACGCGTACCAAACTGACCATT 42706 Query 273845 GGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGT 273904 || | ||| | || || ||||| || ||||| |||| ||||||| ||| || || || Sbjct 42705 AGGTTGAAGCAAATTAATATTGTTACTTCCGACATAATTTTGAGCCAAATTAACAATTGT 42646 Query 273905 CCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAA 273964 | ||| || || || || || ||||| || || |||||||| | ||||| || Sbjct 42645 ACTGCAAAGTGAAACTTCACCATGATGATATGCACTCTGTTCGGCAACGGAACCAGCCAA 42586 Query 273965 CTGAGCAACCTTCACATC 273982 ||||||||| || || || Sbjct 42585 CTGAGCAACTTTAACCTC 42568 >seq17255 Length=1118 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 282966 AAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025 ||||||||||| |||||||| ||||| || ||||| |||||||| || || ||||| Sbjct 1 AAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTTACA 60 Query 283026 GTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTA 283085 | || ||||| || || | || ||||| | || || || ||||| || || || ||| Sbjct 61 TTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTAATAGTTTTACCAGTTAATGTTTTA 120 Query 283086 ACGAATATCTGCATT 283100 ||||| || |||||| Sbjct 121 ACGAAAATTTGCATT 135 >seq10680 Length=1285 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| || || || |||||||| || || || || | ||||| ||||| || | |||| Sbjct 1279 GGAATTCCTTCTTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCAGATGGTTCG 1220 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | ||||| ||||| || ||||||||||| ||||| || ||||| Sbjct 1219 ACTTCCAATGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 1170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046390169720350