Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq442 163 6e-35
seq296 161 2e-34
seq10 136 8e-27
seq782 104 5e-17
seq17255 95.1 3e-14
seq10680 91.5 3e-13
>seq442
Length=86436
Score = 163 bits (180), Expect = 6e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| | || | || | || ||||||||||||||||||||
Sbjct 24989 ACCACCACGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCT 25048
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| || || ||||| |||| |||||| || |||||||||||||| ||||| || ||
Sbjct 25049 CAATGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGG 25108
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || ||||| ||||| ||||| || || || | || || ||||| || | |||||
Sbjct 25109 AATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGAC 25168
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||||| || || |||||||||||||| || || ||||| ||||||||
Sbjct 25169 TTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 25216
>seq296
Length=113092
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || ||||| |||| ||| || || |||||| ||||| ||||||||
Sbjct 112857 CCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTC 112916
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| || || ||||| || | |||||| || || ||||||||||| |||||||| |||
Sbjct 112917 AATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGA 112976
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || || ||||||||||||||||| ||||| | || || ||||| || | || |||
Sbjct 112977 ATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAACT 113036
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | ||||| || || || ||||||||||| ||||| || |||||
Sbjct 113037 TCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083
>seq10
Length=552578
Score = 136 bits (150), Expect = 8e-27
Identities = 273/403 (68%), Gaps = 4/403 (1%)
Strand=Plus/Plus
Query 43984 CAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACT 44043
|| || || ||||| || ||||| ||||| || ||| | ||| ||||| || | |||
Sbjct 300333 CAGGCATCTACATCAGAATTGTATGGAAAAGTAGTGGAAACTCCACAAACTGAGAAGACA 300392
Query 44044 CCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAA 44103
|| || ||||| | |||||||||| || || || || |||| || ||||| || |
Sbjct 300393 CCATTCTATCCAAGAAGTCCATATGCAGTAGCTAAACTTTATGGATACTGGATCATTATA 300452
Query 44104 AATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGT 44163
||||| || || | || || |||| | |||||| |||| || ||||| |||
Sbjct 300453 AATTACCGTGAAGCTTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATGAATCG 300512
Query 44164 CCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATATTT-- 44221
|| | ||||| | | ||||| || | ||||| || | | || || || ||||
Sbjct 300513 CCAAGGAGAGGAGAAAATTTCGTTACAAGGAAAATTACCCGATCAGTCGCTAAAATTTCA 300572
Query 44222 TCAACGGGACAGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGAT 44281
| || | ||| | ||| | || | || || || | ||||| ||| | ||||||||
Sbjct 300573 TTAAAGCAACA--AGAATTCTTGGAACTTGGTAATCTTGACTCAAAACGTGATTGGGGTC 300630
Query 44282 ATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAACAAGACAGGTCAGACGACT 44341
|||| ||| || || ||||| |||||| ||||||||||||| || | |||| || |
Sbjct 300631 ATGCAAAGGACTACGTGGAAGCTATGTGGATGATGTTGCAACAGGATCAGCCAGAAGATT 300690
Query 44342 ACGTTATTGCAACTGGAAAGACGACGAGTGTCCGTGACTTTGT 44384
|| ||||| || || | || ||||| || || |||||
Sbjct 300691 TTGTAATTGCTACAGGCGAAACTCGCAGTGTACGAGAATTTGT 300733
>seq782
Length=54866
Score = 104 bits (114), Expect = 5e-17
Identities = 252/378 (67%), Gaps = 8/378 (2%)
Strand=Plus/Minus
Query 273609 GGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGG 273668
|||| || || ||||| || || |||||||| || ||||| || |||| | ||
Sbjct 42941 GGAATTTTTGTTGACCATCCAGTACCAATACCTTCAGCGCCATTTACAAGAACCATTGGA 42882
Query 273669 ATAATTGGGACATAATATTCGGGCTCAATT---TTATCACCATCGTCGTAAAGGTACTTC 273725
|||||||| ||||||||||| |||||||| | || | || || ||| || |
Sbjct 42881 ATAATTGGAACATAATATTCAGGCTCAATACGCTGATTGTCTTCATCCAAAAAGT---TA 42825
Query 273726 AACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGA-GGATTCAGTTTCGTGAA 273784
| ||||| |||||| | ||| | | || | || | || || |||||||
Sbjct 42824 AGCAAAGGATCATCATGTGGATGGAAGATGTGACGAG-CTAATGGCGAAAGCATCGTGAA 42766
Query 273785 AATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTC 273844
||| || | | ||| ||| || || || || | | || |||||||||||| |
Sbjct 42765 AATATAACGAGGACTTGCAGAATCTTTTCCTCCCGTTAAACGCGTACCAAACTGACCATT 42706
Query 273845 GGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGT 273904
|| | ||| | || || ||||| || ||||| |||| ||||||| ||| || || ||
Sbjct 42705 AGGTTGAAGCAAATTAATATTGTTACTTCCGACATAATTTTGAGCCAAATTAACAATTGT 42646
Query 273905 CCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAA 273964
| ||| || || || || || ||||| || || |||||||| | ||||| ||
Sbjct 42645 ACTGCAAAGTGAAACTTCACCATGATGATATGCACTCTGTTCGGCAACGGAACCAGCCAA 42586
Query 273965 CTGAGCAACCTTCACATC 273982
||||||||| || || ||
Sbjct 42585 CTGAGCAACTTTAACCTC 42568
>seq17255
Length=1118
Score = 95.1 bits (104), Expect = 3e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 282966 AAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025
||||||||||| |||||||| ||||| || ||||| |||||||| || || |||||
Sbjct 1 AAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTTACA 60
Query 283026 GTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTA 283085
| || ||||| || || | || ||||| | || || || ||||| || || || |||
Sbjct 61 TTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTAATAGTTTTACCAGTTAATGTTTTA 120
Query 283086 ACGAATATCTGCATT 283100
||||| || ||||||
Sbjct 121 ACGAAAATTTGCATT 135
>seq10680
Length=1285
Score = 91.5 bits (100), Expect = 3e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049
||||| || || || |||||||| || || || || | ||||| ||||| || | ||||
Sbjct 1279 GGAATTCCTTCTTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCAGATGGTTCG 1220
Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| | ||||| ||||| || ||||||||||| ||||| || |||||
Sbjct 1219 ACTTCCAATGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 1170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046390169720350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |