Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq119 334 8e-87 seq205 84.2 2e-11 >seq119 Length=197918 Score = 334 bits (370), Expect = 8e-87 Identities = 615/889 (69%), Gaps = 28/889 (3%) Strand=Plus/Plus Query 23161 TAAAAATCTTCATCTAAAGTGAATTTCACTGCTTTATCACTATTCATAACACCCATTTTT 23220 || ||||| | ||||| ||||| | ||| | |||| |||||| || | ||| Sbjct 167101 TAGAAATCAGCGTCTAATGTGAAAACTTGTTCTTGACGACTAGACATAACTCCACTCTTT 167160 Query 23221 TGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTCC 23280 |||||||| ||||| || |||||| || |||||||| ||||| | ||| ||| |||| Sbjct 167161 TGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCCCTCAAGTGAAATAAATTCC 167220 Query 23281 ATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTA-CATGAT--AATTC---CTTT 23334 ||||| |||||||| |||||||| || |||| || | ||||| | | Sbjct 167221 ATAAATGAGAATGGATTTTTGGTATTATAGAC---TTTATCAAGTCCCAATTCACCCAAT 167277 Query 23335 AAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATT 23394 ||| | ||| || |||||||| || || ||| ||| |||||| | || || || | Sbjct 167278 AAATG---ATCAGCAACAAATTCTATGTACTGAGTCATTAAATCACAATTCATGCCCAAC 167334 Query 23395 AGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATT 23454 | || ||||||| || ||| ||| ||| || ||||| ||||| ||| | || Sbjct 167335 ATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTACAGCCTCTGTGATA 167394 Query 23455 ATTTGAACAATAACTTCTTCACTAGGTGGATATTTT---AAATACTTAAACAATAAACAT 23511 |||| ||| | || ||| | ||||| | | | | || || ||| ||| ||| Sbjct 167395 ATTTCAACTA---CTCTTTCCTTTGGTGGCTTCTGTTCAAGATGTTTGTACATTAAGCAT 167451 Query 23512 GCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCT 23571 ||||| |||| ||| || ||||| || || ||| | |||||| |||||||| || ||| Sbjct 167452 GCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAAAATGTCAACCCT 167511 Query 23572 GGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATA 23631 ||||||||||||| || |||||||||||||| || ||||| || ||||||||| Sbjct 167512 GGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTACCACTAAAGAAAATC 167571 Query 23632 CCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATC 23691 || || ||||| ||||| || | || ||| |||||| ||||||| | || ||| Sbjct 167572 CCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCATTCTTGCTGGATATC 167631 Query 23692 CAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAG 23751 || ||| | ||| | ||||||| || ||||| || ||| |||||||| || || Sbjct 167632 CAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCTCAATTGCATTGAAT 167691 Query 23752 AGAAAAGTTTTTTCTTCATT--ATCTGTTATATATGTATCAATTAGTAAACTATACATTT 23809 | | ||| | || | || |||| | ||||| || ||||||| || ||||| | Sbjct 167692 A-AGAAG-TCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAATATTGAGTACATCT 167749 Query 23810 CAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATT 23869 | || || | |||||| |||||||| || || ||||| || ||| |||||| | | || Sbjct 167750 CCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAGCTTCTGGAACTT 167809 Query 23870 GAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAA 23929 |||| || | | || | | | |||||| || || || || |||||| ||||||| Sbjct 167810 GAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCATCAGATGCAGCAA 167869 Query 23930 AGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATCAGTTGATAATTTTTTCCAAT 23986 ||||||| | |||| |||||||| | || ||| |||| | || ||||| | Sbjct 167870 AGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATC-CTTGAGA--TTGTTCCAGT 167926 Query 23987 CATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGC 24035 | | ||||||||||||||||| ||||| || |||||||| || || || Sbjct 167927 CTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAAGCTGGC 167975 >seq205 Length=143123 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 23898 ATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATG 23957 |||||| ||||| || |||||| |||||||| ||||| | |||| ||||| || Sbjct 86144 ATTTTCATTAACGATCCCATCAGATGCAGCAAAAAAAGCTAATACATGAGAGATAAATTG 86085 Query 23958 TCTTTCATCAGTTGATAATTTTT-TCCAATCATTAATATCTTTTGATAAATCAACTTCAT 24016 || ||| || ||| | | |||||| | | ||||| ||||||||||||||||| | Sbjct 86084 TCGCTCA---GTCTTTAAGTCTAATCCAATAAGTCATATCCTTTGATAAATCAACTTCCT 86028 Query 24017 CAACTGTCCAAAAACTTGC 24035 |||| |||| |||||| || Sbjct 86027 CAACAGTCCTAAAACTAGC 86009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521318353435000