Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq767 149 8e-31 seq10553 129 8e-25 >seq767 Length=55330 Score = 149 bits (164), Expect = 8e-31 Identities = 297/435 (68%), Gaps = 10/435 (2%) Strand=Plus/Plus Query 50475 GGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAAT 50534 || ||||| || || ||||| || ||||| ||| |||||||||| || || | || Sbjct 37575 GGTGATTTGGGTCCAGTTTATGGATTTCAGTGGCGACATTTTGGTGCCAAATATAAAACA 37634 Query 50535 TGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTAT--AACGACGT 50592 ||||| | | || ||||| ||||| | || ||| | | | | || |||| Sbjct 37635 TGCGATGATGAATATGAAGGCCAAGGAATTGACCAATTAAAGGATGTCATTGAACGCA-- 37692 Query 50593 TGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAG 50652 | ||| | || || | ||||| |||||| || ||| ||| ||||||||| || || Sbjct 37693 TCAAAGCCAATCCAAATGATCGTCGTATTATATTGAGCGCATGGAATCCAGTGGACATTC 37752 Query 50653 ATCAAACCGTTTTACCTCCGTGTCA-TGTTTTATGTCAATTTTATGCCACAGACAATGTT 50711 |||| | | || || ||||| ||| | | ||||||||||| | | | || Sbjct 37753 CACAAATGGCACTTCCACCATGTCACTGTCTCGT-TCAATTTTATGTCGCTAATGGTGAA 37811 Query 50712 TTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTA 50771 || ||| |||| || ||||||||||||||||||||| | || ||||||||||| | Sbjct 37812 TTGAGCTGCCAATTATACCAAAGATCAGCTGATATGGGTCTTGGAGTTCCTTTCAATATT 37871 Query 50772 GCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGAGAA 50831 || || || || ||||| ||||| |||| ||||| | || |||| || || || Sbjct 37872 GCATCGTATGCCTTATTGACGTACATGATTGCTCATGTTACAAATTTGAAGCCTGGTGAT 37931 Query 50832 TTTATTCATACGTTAGGAGACGCTCATATTTACCTCGATCACGTCGATGCTTTAAAGGAG 50891 ||| ||||||| || || || |||||||||||| ||||| || | || || ||| Sbjct 37932 TTTGTTCATACTTTTGGCGATGCTCATATTTACACGAATCACACTGAGCCATTGAAAGAG 37991 Query 50892 CAATTGACTCGAACG 50906 || ||||||||| Sbjct 37992 CA----ACTCGAACG 38002 >seq10553 Length=1873 Score = 129 bits (142), Expect = 8e-25 Identities = 268/396 (68%), Gaps = 20/396 (5%) Strand=Plus/Plus Query 155745 GATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAATTTTTAGTTTCAACG 155804 || || || || ||||| || |||||||||||||| || ||| |||| ||||| | Sbjct 917 GACTGTGCTGCACGTACTAAACCTTCCAATTCAGCACCACTGAAATTCTTAGTGAGAGAT 976 Query 155805 GCTATTT-TATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAGATTTCAT---TTTAGC 155860 |||| || || || || ||||| | | | | | ||| | |||| ||| | Sbjct 977 GCTAATTCTACACAA-TCAACGTCAGGATTGATTTTCTTGAATTCTCTCATACGTTTTGT 1035 Query 155861 AACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTT 155920 | || | ||||||||||| | | || ||||| || || |||||||| |||| Sbjct 1036 A---TGAATATTTAAAATTTGTACTCTTCCAGGTTCATTAGGCAAGCCAATTTCCATCTG 1092 Query 155921 CAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCAT 155980 | |||||| | ||||||| | || ||||||||||| | ||| ||| || ||||| Sbjct 1093 AACTTCCAATCTACCAGGTCGCATCAAAGCTTCGTCAATCATGTCACGTCGATTTGTCAT 1152 Query 155981 ACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATT 156040 ||| |||| |||||||| ||||| ||| |||||||| || |||| |||||||||||| Sbjct 1153 ACCGATGACCAAAATGTTATTTAATTGTTCAACACCGTCGATCTTAGCCAATAATTGATT 1212 Query 156041 GACTACGGCGTCGTG--CG----------TGGCGTTATCACCGCGTTTTTTACACAGAGC 156088 || || | || || || || | ||| || |||||| | ||| Sbjct 1213 CACAACCGTATCATGGACGCCAGAATTTCCAGCCACAGAACCTCGAGATTTACAAATAGC 1272 Query 156089 ATCTATTTCATCGAAGACGATAACGTGTAATCCGCT 156124 ||| ||||||||||| | ||||| ||| | ||||| Sbjct 1273 ATCGATTTCATCGAATATGATAATGTGGAGACCGCT 1308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666858192099000