Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_000935.1 Length=36524 Score E Sequences producing significant alignments: (Bits) Value seq157 421 2e-113 seq14 174 4e-39 seq66 172 1e-38 seq9 136 9e-28 seq54 123 6e-24 seq1 114 3e-21 seq23 100 7e-17 >seq157 Length=245904 Score = 421 bits (466), Expect = 2e-113 Identities = 322/376 (86%), Gaps = 5/376 (1%) Strand=Plus/Plus Query 27926 GCCTTAGCAAGCACGCTAGACGTAAACCAAATCTGCCCATTATGAGATATGGTTTCAAGA 27985 || ||||||||| || ||| || ||||| || ||||| || ||||| || |||||||| Sbjct 33329 GCTTTAGCAAGCTCGGCAGAGGTGAACCAGATTTGCCCGTTGTGAGAAATAGTTTCAAGC 33388 Query 27986 ACAGTATTGCGGAAAACTAAAGTAGTCATAGTAATGATTTCCTTGTTAGTTAAGGATAAT 28045 || ||||||||||| | ||| || |||||||||||||||||||||||||||||||| || Sbjct 33389 ACGGTATTGCGGAACATTAAGGTTGTCATAGTAATGATTTCCTTGTTAGTTAAGGAACAT 33448 Query 28046 CACCACCTTTGAGGTCTCAAACTC-ATATTGGCGGTGAACTGAACAGGGTTGAGACTACC 28104 ||||||| | ||||| |||| ||| ||||||||||||| |||||||||||||| || ||| Sbjct 33449 CACCACC-TAGAGGTATCAATCTCTATATTGGCGGTGAGCTGAACAGGGTTGATACGACC 33507 Query 28105 GGCTAACAAGGACCCAGCGAGCCTTTCGGCTCCCCCATCCAGCCCACCATTGATTTTTGA 28164 ||||||||||||||| ||||||||| ||||||||||||||||||||||||| || ||| Sbjct 33508 GGCTAACAAGGACCCGGCGAGCCTTGCGGCTCCCCCATCCAGCCCACCATT--ATTCTGA 33565 Query 28165 TATGGCAGCCTGACGCATaaaaaaaaCACGCTTACTGCGTGCTATGCGCCTTGTTAGCTA 28224 |||||| | ||||||||| ||||||||||||| | ||||| ||||||||||||||| || Sbjct 33566 TATGGCGGACTGACGCAT-AAAAAAACACGCTCTCGGCGTGTTATGCGCCTTGTTAGTTA 33624 Query 28225 ATACGGGGTCTCAAACCCGACACCTGATTTTGCAGATGCAAATAAACTATAGCGCATGAT 28284 | |||||| ||||||||| ||||||| |||||||||||| || ||||||||||||| Sbjct 33625 AACCGGGGTATCAAACCCGGCACCTGAATTTGCAGATGCAGATTGACTATAGCGCATGGG 33684 Query 28285 TTCTTCTTTCGTCAAT 28300 |||| ||| ||||||| Sbjct 33685 TTCTCCTTGCGTCAAT 33700 Score = 176 bits (194), Expect = 1e-39 Identities = 489/741 (66%), Gaps = 13/741 (2%) Strand=Plus/Plus Query 29989 TTCCCCCCGTAGGTTTTTAGCCTTTCCCATTTACGACTATAGGGGTTAGTCCCCATATAG 30048 || || |||||||||| || | || |||||| || || |||| ||| | ||||| ||| Sbjct 214570 TTGCCGCCGTAGGTTTGCAGGCGTTGCCATTTCCGGCTGTAGGTGTTGATGCCCATGTAG 214629 Query 30049 GTGAT-TTGTCCAT-TC-TCTATTCGCGCAGAAGGGTAACAAAGACTCCGCCCTGATGGT 30105 |||| ||| | | || || || || || || ||||| | ||| || || || Sbjct 214630 CTGATCTTGCCGCTGTCGTCGATACGTGCGCCGGGATAACAGACCGCCCGGCCAGAGGGA 214689 Query 30106 AAACAAATCCTGAGCCAGCTTTTATCGCGCCGGACGCTAAGTTTACGGCACTTAAACGCT 30165 | ||| | ||||||||| ||||| || | | | ||| ||||| || | | Sbjct 214690 AGCTGAATACGTAGCCAGCTTCCGTCGCGGCGAAGTTTTAATTTGCGGCAGGAAATGGTT 214749 Query 30166 ATCCCCGGTGACTGAATCGCTTGTTTTACGGCGTCTTCAATGTCGTACCAGAATGATACG 30225 || || |||| ||| || | ||||| ||||| | || |||||||| | || Sbjct 214750 ATGCCGGGTGTGGCAATGGCGCGCCGGACGGCATCTTCCAGTTCATACCAGAAAG---CG 214806 Query 30226 GTTTGT---GGATGGGCATTGCGCCACATACGCTTAAGGGAATCGCAGGTAACAAAGATT 30282 ||| | || |||||||||||||||| || || || ||||||||||| | ||| | Sbjct 214807 GTTATTTCAGGGTGGGCATTGCGCCACAGTCGTTTGAGCGAATCGCAGGTGATAAAAACG 214866 Query 30283 TTTTCGCTAAGGCCATAAGTTTTATCTGTTTCAACGGATTTTTGATACCAGCGCATCGCC 30342 | || || ||| | || || | | |||| | || ||| |||| | ||| Sbjct 214867 GCTCCGGATAGCCCAAAGGTATTGTTTTTTTCCTCAGAAATTTCCCACCACTCGACCGCT 214926 Query 30343 TCTCGTT-TAACGCCAGGCGG-TATATTAGGTAATGCGGCTTCCGCCAGTTCATCTAAAT 30400 | | | || || | |||| ||| | ||| | ||| |||||||||||||| | || Sbjct 214927 TTACATCGTATCG--ATGCGGGTATCTCAGGCAGGGCGATCTCCGCCAGTTCATCCAGAT 214984 Query 30401 CCAGACCGTAGGCGAGGGCGAATGTCAGAAATGCCGCAACGCCTCCACCATAGCCTAAGC 30460 || | |||||| | || ||||| || || || || ||||| ||| |||| Sbjct 214985 TAAGCTCATAGGCGGCAGAAAAGGTCAGGAAAGCGGCGACCCCTCCCTGATACCCTAGAG 215044 Query 30461 CGAGCTCCATCACCTTACCGATTTGCCGTTGTTCTTTGGTGACGTCCTCAGGTAAAAGAT 30520 | | || | |||||||||||||| ||||| ||||| | ||| || ||||| | | Sbjct 215045 CTAATTCGAGGACCTTACCGATTTGACGTTGGTCTTTTGAGACATCGTCAGGGTTTATAC 215104 Query 30521 TAAAAGCGCGCGCATAGGCGAGTTTATAGAGGTCATCACCTTTGCCGTTATCAAACTCGC 30580 ||| || || ||||| || || || || ||||||| || |||| ||| | || | Sbjct 215105 GAAAGGCCCGTGCATAAGCCAGCTTGTACAGGTCATGTCCAGTGCCCGCGTCATAATCAC 215164 Query 30581 TAAAAGCGTTGACTTTCCAGTTTTCCCCTGCCAGCCACGCCAGCATGCGGCCTTCGATAT 30640 ||| || | | ||| |||| ||| | || ||||| ||||| | ||| || ||||| | Sbjct 215165 GAAACGCCTGTAATTTTCAGTCTTCTTCCGCGAGCCATGCCAGTACGCGTCCCTCGATGT 215224 Query 30641 TCGACAAATCCGAGATAACCAGCTTTTTACCCGGTGGTGCAATAATACATCCTCTTAGCG 30700 | | || || | ||||| |||||||||| || || || || || || | | || Sbjct 215225 TGCTAAGGTCGGACACCACCAGTTTTTTACCCGCAGGGGCCATGATGCAGCCGCGCAACG 215284 Query 30701 CGGAACTGGTCAGTTGCATAA 30721 | ||||| | ||||||||||| Sbjct 215285 CTGAACTTGCCAGTTGCATAA 215305 Score = 104 bits (114), Expect = 5e-18 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 26608 CCCGTCGCTCTCCACACTGCCTGTTGAGAAGCCCATTCTTTACTTGCGCCAAATCGGGCG 26667 || ||||| | |||||||| | | ||||| |||||||||| || || | || Sbjct 210562 CCGGTCGCGCGCCACACTGACCGGACGGAAGCATATTCTTTACTGGCACCCAGCAAAGCT 210621 Query 26668 GCCATTTTTTCACGCTCTCGTATCGCACGATTAGCAATGCGCTGGTAGGCTGAATTACGT 26727 ||||||| ||||| ||| |||||| ||| || ||||||||||| | | |||||| Sbjct 210622 GCCATTTCATCACGGTCTTTTATCGCCTTATTGGCGATGCGCTGGTAAACAGCATTACGC 210681 Query 26728 TGGAGTGCAGTGGCTTCCC-TTTTGCGACTAATATGGGATTTGGTACGGATAGCTTCATC 26786 ||| || |||||||||| |||| || || || || | |||||| ||||| ||||| || Sbjct 210682 TGGCAGGCGGTGGCTTCCCGTTTTTCG-CTGATCTGCGCTTTGGTGCGGATGGCTTCGTC 210740 Query 26787 TCTCTGGTCAGTAATAACAGC 26807 | || || | |||| |||| Sbjct 210741 GCGTTGTTCGGCAATATCAGC 210761 Score = 100 bits (110), Expect = 7e-17 Identities = 191/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 30817 GGTTGAAAAACGCGCCCCGCCCAGCGTCCGGTGCGTGAGGCACCACAAAATTGCTTAGTT 30876 ||||| |||| ||||| ||||| | || || ||||| || |||||||||||| || Sbjct 217055 GGTTGGAAAAGCCGCCCAGCCCACCTGCCTGTTCGTGATGCGCCACAAAATTGCAGCGTG 217114 Query 30877 CCTCTAAGTCGTCCATCTGCACTCACCGATTTTAACAGCGCTTTATATTTACTGGTGCTG 30936 || | ||| || ||||| || || ||| | | | | ||||||||||||||||||| Sbjct 217115 CCGCGAAGACGGCCATCACTGCTAACTGATCTGAGTAAAGTTTTATATTTACTGGTGCTG 217174 Query 30937 GTTGTACAGGATTGCAGACGGACTGACAGCAGTTCGCGTAAAGCCGGTGGGATATCAGGG 30996 || | | || |||||| || | || ||| ||||| | || ||||| | || ||| Sbjct 217175 GTGGCGCTGGCTTGCAGGCGTATTGCCAGTAGTTCTTTCACTGCTGGTGGTAATTCGGGG 217234 Query 30997 TCATTAATGCGGCGCTGTAGCGTACTGGCCTGCATATCTGGTAACGTGATGCCAAATGCA 31056 || || ||||| | || || || |||||||| || || || | || | Sbjct 217235 TCTGATATTCGGCGTTCCAGTGTGCTTTTTTGCATATCAGGCAAAGTCACACCGTA---G 217291 Query 31057 GAAGCGAT---ATGTTGTAGCAGAGCATCGCGTTGTGTTG 31093 || |||| ||||| || || ||||||||||| |||| Sbjct 217292 GACTCGATGAGATGTTTTAACATGGCATCGCGTTGAGTTG 217331 Score = 98.7 bits (108), Expect = 2e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 32699 CAACTTGAGATGTCAGGTATTCGCGCTGAGCAAAAGTTAATACGCTGGATGTTAGGCGCC 32758 || ||||||||| | ||||||||| | ||||| |||||||| ||||||||| | | || Sbjct 35240 CAGCTTGAGATGGCGGGTATTCGCTCCGAGCAGAAGTTAATGCGCTGGATGCTGAGTGCT 35299 Query 32759 GGTATTTTGGGTATCCTTTCTCTGGTGGTAAAAGCCTTT 32797 || ||||||||||| || |||||||| || ||||| ||| Sbjct 35300 GGAATTTTGGGTATTCTCTCTCTGGTTGTGAAAGCTTTT 35338 Score = 98.7 bits (108), Expect = 2e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 32699 CAACTTGAGATGTCAGGTATTCGCGCTGAGCAAAAGTTAATACGCTGGATGTTAGGCGCC 32758 || ||||| ||| | ||||||||| | ||||| |||||||| ||||||||| | |||| Sbjct 213389 CAGCTTGAAATGGCGGGTATTCGCTCCGAGCAGAAGTTAATGCGCTGGATGCTGAGCGCT 213448 Query 32759 GGTATTTTGGGTATCCTTTCTCTGGTGGTAAAAGCCTTT 32797 || ||||||||||| || |||||||| || ||||| ||| Sbjct 213449 GGAATTTTGGGTATTCTCTCTCTGGTTGTGAAAGCTTTT 213487 Score = 91.5 bits (100), Expect = 3e-14 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 33780 ACATCGTCAAAGTCGTTTAAGGGGGTAGTAATAATGGCAGGTCTTGGGTCCGATTCCGGT 33839 ||||||||||||||||||| ||| | |||| | || ||| | || || | ||| || Sbjct 218705 ACATCGTCAAAGTCGTTTACGGGATTGATAATTAATGCCGGTTTGGGATCGGCTTCTGGC 218764 Query 33840 GCGATAACGGGTTTACCGTCTGCTCGCTCGATAAGCGCTTCCAGTTTTGCCCATCGATGT 33899 | || ||||||| || || | || |||| ||||| | |||||||| || | Sbjct 218765 ACCATGGCGGGTTTTCCATCAGGGCGGGTAATAATGGCTTCTACCTTTGCCCAACGGCGC 218824 Query 33900 GGTTTGTCTTTTTTAAGGAGTTTCTCAGCCTGGGGTGGGCTGATAATTTT 33949 || ||||||||||| || || || || ||||| | |||||||||| ||| Sbjct 218825 GGATTGTCTTTTTTCAGCAGGTTTTCGGCCTGCGCCGGGCTGATAACTTT 218874 >seq14 Length=11141052 Score = 174 bits (192), Expect = 4e-39 Identities = 147/181 (81%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 31324 TTAAAACGTTGCCATTCCTCTGCATGGGTTAACGCCGTAGCACGTTGTATTTTGCTATTT 31383 |||| ||||||| ||||||| || ||||| || || || | |||||||| ||| ||| Sbjct 9140204 TTAACCCGTTGCCGTTCCTCTCTGTGCGTTAAGGCGGTGGCTCTTTGTATTTCGCTGTTT 9140263 Query 31384 TTAGGGCGGGGTTTGCACAATAAAGAGATAAGGGCTTTACCCTCTTTATCTTTGGCTTTA 31443 |||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 9140264 TTAGGGCGCGGCTTGCAAAATAAAGAGATAAGGGCTTTACCTTCTTTATCTTTGGCTTTA 9140323 Query 31444 TCGCTATTGACGTTGAAGATATCGCAAAGCAAGCCAAGCGCACCGGGTAGCCCATGTGCT 31503 || |||| ||||| || ||||||||| | | ||||| || |||| ||||||||| Sbjct 9140324 TCTGCCTTGATATTGAAAATTTCGCAAAGCGAACTTAGCGCGCCCGGTAAGCCATGTGCT 9140383 Query 31504 A 31504 | Sbjct 9140384 A 9140384 >seq66 Length=3238526 Score = 172 bits (190), Expect = 1e-38 Identities = 222/299 (74%), Gaps = 12/299 (4%) Strand=Plus/Plus Query 31746 AGTGCCACAATTAATGGGGATATCGCTGTAGGTTTCTAAATCGCAAAATAGTAAATTTTG 31805 |||| |||||||||| || || || |||||||| |||||||||||||| ||||||| ||| Sbjct 135791 AGTGTCACAATTAATCGGTATGTCACTGTAGGTCTCTAAATCGCAAAACAGTAAATCTTG 135850 Query 31806 C---ATAATCCATCCTTATCAGGCCGTAACAGAAAAACGCCCCATTTTAGGGTGATACCC 31862 | |||| |||||| |||||| |||| |||||| || ||| ||| |||||||||| Sbjct 135851 CATGATAAATTATCCTTCTCAGGCGGTAAGGGAAAAATGCTCCA-TTTCGGGTGATACCA 135909 Query 31863 CTGACTGCCGCGTT-TCT--CAGCCCTAAGCATCATTTTATCCAGTGCATTTTTAAAGGC 31919 | ||| || | || ||| || || || || | || | ||||||||||| || Sbjct 135910 CCGACGCCCACATTGTCTGGCATCC---TCCAAAATGTCATAAATGGCATTTTTAAATGC 135966 Query 31920 TTCTTCATCAACCACTGACATTTGGGTAATTGGGCCACCGGGTACAACATGAGGCTC-TT 31978 ||||| |||||||| || |||| ||||| |||| | || |||||| | | || Sbjct 135967 TTCTTTGTCAACCACCAACCTTTGAATAATTTGGCCGCTTGGCGCAACATAAAATACTTT 136026 Query 31979 TTTTATAAGGTATATTCCACGCCATCACTAACTGCGACATTTCGCATCACTCAAACCAT 32037 |||| ||||| | | ||| ||||||||||| | |||||||||||||| | || |||| Sbjct 136027 TTTTGTAAGGAACGTCCCATGCCATCACTAA-TCGGACATTTCGCATCATTTAAGCCAT 136084 >seq9 Length=14622856 Score = 136 bits (150), Expect = 9e-28 Identities = 129/161 (80%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 32695 CCTGCAACTTGAGATGTCAGGTATTCGCGCTGAGCAAAAGTTAATACGCTGGATGTTAGG 32754 |||||||||| ||||||| || ||||| ||||| ||||| ||||| ||||||||||| || Sbjct 13946366 CCTGCAACTTAAGATGTCTGGCATTCGTGCTGAACAAAAATTAATCCGCTGGATGTTGGG 13946425 Query 32755 CGCCGGTATTTTGGGTATCCTTTCTCTGGTGGTAAAAGCCTTTTTGATGCCTGCGCTATA 32814 || ||||||| ||||| |||||||| |||| ||||| |||||||||||||| |||| Sbjct 13946426 TGCGAGTATTTTTGGTATTCTTTCTCTATTGGTTAAAGCTTTTTTGATGCCTGCCTTATA 13946485 Query 32815 ATGA-TATTG-GGGCTGTTAGCTTA-ACGATAGAGCAGAGG 32852 | | |||| ||| | |||||| | | |||||||| || Sbjct 13946486 ACAAGCATTGTGGGTTATTAGCTCAGTTGGTAGAGCAGTGG 13946526 >seq54 Length=4174699 Score = 123 bits (136), Expect = 6e-24 Identities = 160/220 (73%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 28750 ATCCTGTGCCGCCTTAAAATAAAGTGGGCTGTCGTTTTTTCTAAAGGCCATGATGTTTAT 28809 ||||||||| ||||||||||||| | |||| ||| || |||| ||||||| ||||| Sbjct 3193282 ATCCTGTGCAGCCTTAAAATAAAACGAACTGTTGTTCCTTTTAAATACCATGATTTTTAT 3193341 Query 28810 TTTATCCTGTG---TGTTATTTATTCCTTTCGGTAGCGATAAGTCTCAAACCCATTGGCG 28866 ||||||||||| ||| ||||||| |||| | |||||| || ||| |||| || Sbjct 3193342 TTTATCCTGTGTATTGTAATTTATTTCTTTTGATAGCGA----ACTTAAAGCCATCGGGA 3193397 Query 28867 CTAAGCGGTAAATCCCAAGCCCAGTCCGAATTAAAACTTAAGAGTTTGCTTAATCCCTCG 28926 | ||||||||||| || |||| || | | | | |||| ||||| ||||| || Sbjct 3193398 TTCAGCGGTAAATCAAAAACCCAATCAGGTTGATGAGTTAACAGTTTACTTAAATGCTGA 3193457 Query 28927 GCTGAAAATTGGGGTGTATCGGGTGCTTCGCTGATAATTT 28966 |||| ||||| | || || |||||||| ||||||| Sbjct 3193458 ACTGAGAATTGAACGATTTCCGGAGCTTCGCTAATAATTT 3193497 >seq1 Length=33720124 Score = 114 bits (126), Expect = 3e-21 Identities = 151/201 (75%), Gaps = 9/201 (4%) Strand=Plus/Minus Query 27990 TATTGCGGAAAACTAAAGTAGTCATAGTAATGATTTCCTTGTTAGT-TAAGGATAATCAC 28048 |||| |||||||||| ||| |||||| ||||||||| ||| | |||| ||| | Sbjct 22359719 TATTACGGAAAACTATGGTATTCATAGA---GATTTCCTTTCTAGGATTAGGACAATGGC 22359663 Query 28049 CACCTTT-GAGGTCTCAAACTCATATTGGCGGTGAACTGA-ACAGGGTTGAGACTACCGG 28106 ||| ||| ||||| || ||||||||| | | | || |||||||| | |||||| Sbjct 22359662 CACTTTTTGAGGTTCGAATCTCATATTGACCGAGGTGTGGTACAGGGTTCGAATTACCGG 22359603 Query 28107 CTAACAAGGACCCAGCGAGCCTTTCGGCTCCCCCATCCAGCCCACCATTGATTTTTGATA 28166 ||| || ||||| ||||||||| | ||||| |||||||||||||||||||| | | Sbjct 22359602 CTAGAAATGACCCGGCGAGCCTTAAGACTCCCT-ATCCAGCCCACCATTGATTTCATA-A 22359545 Query 28167 TGGCAGCCTGACGC-ATaaaa 28186 |||||| || |||| |||||| Sbjct 22359544 TGGCAGACTAACGCAATAAAA 22359524 >seq23 Length=8445320 Score = 100 bits (110), Expect = 7e-17 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 26442 TTCAGCGATATCGATACCGTGTATTTCAAGCCACGCCTCCCTCGGATAAATCACTTCACG 26501 |||||| || | |||||||| |||||||||| | |||| |||| |||||||||| | || Sbjct 8322796 TTCAGCAATGTTGATACCGTATATTTCAAGCTATACCTCTCTCGAATAAATCACTGCCCG 8322737 Query 26502 GCGGTTTTGGTCAGGATTGAAACAGGTTGG 26531 ||||||||||||||||| |||| |||||| Sbjct 8322736 ACGGTTTTGGTCAGGATTAAAACTGGTTGG 8322707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116753256171864