Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3 214 1e-50 >seq3 Length=17889087 Score = 214 bits (236), Expect = 1e-50 Identities = 261/349 (75%), Gaps = 8/349 (2%) Strand=Plus/Minus Query 101747 AGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGC 101806 ||||| || ||||||||||||||| | |||||||||| |||||| |||||||||||||| Sbjct 15712279 AGATTTGTAACATGAGCAATCATGTATGTTAAAAGAGCATAGCTTGCAATGTTAAATGGA 15712220 Query 101807 ACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAG 101866 |||||||| ||||| || || ||||| |||||||| || || || | | |||| Sbjct 15712219 ACTCCTAAGCCCATGTCTGCCGATCTCTGATACAGCTGGCAAGATAATTCGCCATTTGCA 15712160 Query 101867 ACATAAAATTG-ACTTAATACATGACAAGGCGGCAACACCA--TTTTAGGAATGTCTGAA 101923 ||||||||||| || || | ||| ||||| || | ||| || | |||| | | Sbjct 15712159 ACATAAAATTGTACCAAACA-ATGGCAAGGGGGTAGAGCCATCTTGTCTAAATGCAT--A 15712103 Query 101924 ACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATC 101983 |||||| || ||||| | |||||||| || | || || ||||| ||||| | || Sbjct 15712102 GGATTCCAGGCGCACATAATCATCCTTCGGTCATTGGGATTGGTTTTAATAGTGTTTATT 15712043 Query 101984 AACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTC 102042 | |||||||||| || |||| |||| | ||||| | | | | ||||||| || Sbjct 15712042 ACAGCCATTAATTGGTCGACACCTTGTCCTGTGTAATCTGTGTGC-ATGTCTTTATAATC 15711984 Query 102043 TGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCT 102091 ||||||||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 15711983 GGCTCCGAAATGCCTCCACTGAAATCCATAAACAGGCCCAAGATCCCCT 15711935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361245027345902