Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq13 149 6e-31 seq46 107 2e-18 >seq13 Length=9188118 Score = 149 bits (164), Expect = 6e-31 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || || ||||| || ||| ||| || || ||||||| || ||||| || | Sbjct 3474603 TGTTCAATGCAATCGAAACCATGGAGTGTGTTAAGAAGAAGGCAGAATGGGCATTGTCAT 3474544 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| | || | || ||||||||||||| | ||||| || || |||||||||| Sbjct 3474543 GGATCTCAAGCGATAAAGCGACCTTCGGCGAGCGAGTCGTGGCTTTTGCCGCCGTCGAGG 3474484 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | |||| || || |||||||||||||| ||||| ||| | || ||||| ||||| | | Sbjct 3474483 GAATCTTTTTCTCCGGCAGTTTCGCCGCGATATTCTGGATGAAAAAACGTGGCCTTCTAC 3474424 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 | || ||||||||||||||||| | || ||||| || |||| Sbjct 3474423 CTGGGCTGACTTTCAGCAACGAATTGATTTCCAGAGATGAGG 3474382 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 116762 GCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG 116821 || |||||||| || ||||| || || || || ||||| ||||| || || |||| Sbjct 3474876 GCATTTTTCGCTGCATCGGACGGGATTGTAAATGAAAATCTTGTCGAACGGTTTTCTCAA 3474817 Query 116822 GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTG 116881 || || || ||| | || ||| |||| |||||||| ||||||||||| || || || | Sbjct 3474816 GAAGTCCAAGTGACTGAAGCGAGGTGTTTCTACGGTTTTCAGATCGCAATAGAAAATATC 3474757 Query 116882 CACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 || || ||||||||||| || ||||| || ||| Sbjct 3474756 CATTCCGAAATGTATTCACTTCTAATCGATACTTAC 3474721 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||| || ||||| |||||| | |||| || || || || || | |||| ||| Sbjct 3475118 GAGCCGCTTCTTCGCGACAACCCCAGGAGGTTTGTCATGTTTCCGATCGAGTACCACGAC 3475059 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| | ||||||||||||||||| || ||||| ||||| || || || || || || Sbjct 3475058 ATATGGAGAATGTACAAAAAGGCCGAAGCATCGTTTTGGACAGTAGAAGAAGTCGATCTT 3474999 Query 116696 TCCAAGG 116702 || |||| Sbjct 3474998 TCAAAGG 3474992 >seq46 Length=4728336 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||||||||| || | || |||||||||||||| | || |||||| | || Sbjct 1481055 ATGCAAATATTCGTAAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTCGAACCATCC 1480996 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| || |||| || ||||| |||||||| | || || Sbjct 1480995 GACACAATTGAAAATGTTAAGGCCAAGATTCAGGATAAAGAAGGCATCCCACCAGATCAA 1480936 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| || |||||| |||| || | ||||| || |||||||| Sbjct 1480935 CAGAGGTTAATCTTCGCTGGAAAACAGTTGGAAGATGGACGCACTCTTTCGGACTACAAT 1480876 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || |||| || || || || ||| | |||| || || Sbjct 1480875 ATTCAAAAAGAATCCACCCTTCACCTCGTTTTGAGGCTGAGAGGAGG 1480829 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || | || |||||||||||||| |||| |||| ||||| | Sbjct 1480143 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACTCTCGAAGTCG-AGCCATC 1480085 Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | || ||||| | || | ||||| | || ||||| || || ||| | || | Sbjct 1480084 AGATACCATTGAAAACG-TAAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCAGATC 1480026 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||| | ||||||| || ||||| || ||||| || | || || ||| ||| |||| Sbjct 1480025 AGCAAAGGCTCATCTTTGCCGGCAAGCAACTGGAAGATGGTCGTACACTCTCCGATTACA 1479966 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | || ||||| || | || || || || || Sbjct 1479965 ATATTCAGAAAGAATCTACTCTCCACCTCGT 1479935 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || || || || || ||||| | || || || ||| Sbjct 1570026 AAAATGCAGATCTTCGTGAAGACTCTTACTGGAAAGACAATCACTTTGGAAGTTGA-GCC 1570084 Query 40747 ACCG-ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || ||| | | | | |||| | ||||| | ||||| || || || ||| | || Sbjct 1570085 ATCGGACACCATTGACAATGTCAAAGCTAAAATCCAAGACAAGGAAGGAATTCCCCCAGA 1570144 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || | |||| ||| || || ||||| || || | || || || ||||| Sbjct 1570145 CCAGCAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGTACGCTTTCTGACTA 1570204 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || || |||| || || || || ||| | ||||| || || Sbjct 1570205 CAACATCCAAAAAGAATCCACCCTCCACCTTGTTTTGAGGTTGAGAGGAGG 1570255 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || || || || ||||| | || |||||| | | Sbjct 1480827 ATGCAAATCTTTGTGAAAACTTTAACAGGAAAGACGATCACTCTTGAAGTCGAACCATCG 1480768 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || ||| | |||| | ||||||| || ||||| || ||||| | ||||| Sbjct 1480767 GATACGATTGAAAATG-TCAAAGCGAAAATTCAGGATAAAGAAGGTATCCCACCAGACCA 1480709 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || || || ||| | || || | |||||| || || || || Sbjct 1480708 GCAGAGGCTCATCTTTGCCGGTAAGCAGTTAGAAGATGGGCGCACTCTTTCTGATTATAA 1480649 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| || |||| || ||||| || Sbjct 1480648 CATCCAGAAAGAATCCACTCTTCATCTTGT 1480619 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || || || || |||||| |||| ||||| |||| | Sbjct 1480371 ATGCAAATCTTTGTGAAAACTTTAACAGGAAAGACAATCACCCTCGAAGTCGA-GCCATC 1480313 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||| | || |||| || || || || ||||| | ||||| Sbjct 1480312 TGACACCATTGATAATGTCAAAGCTAAGATTCAGGATAAGGAAGGGATCCCTCCAGACCA 1480253 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | || | || || || || |||| |||| ||||| || || ||||| Sbjct 1480252 GCAGAGGTTAATTTTTGCTGGAAAGCAATTGGAAGACGGACGCACACTTTCGGATTACAA 1480193 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || |||| || ||||| || ||| | | || |||||| Sbjct 1480192 CATCCAGAAAGAATCCACTCTTCATCTTGTCTTGAGGCTCAGAGGCGGC 1480144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210170783520