Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq46 154 2e-32 seq3 140 5e-28 seq89 100 4e-16 >seq46 Length=4728336 Score = 154 bits (170), Expect = 2e-32 Identities = 182/245 (74%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || ||||| || || || |||||| |||| | || || Sbjct 1481283 ATGCAAATTTTTGTTAAAACTCTAACCGGAAAGACCATAACTTTAGAAGTCGAGCCATCA 1481224 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||| ||||| |||||||| || || || || || Sbjct 1481223 GACACTATTGAAAATGTCAAAGCTAAAATACAAGACAAAGAAGGCATTCCCCCAGACCAG 1481164 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| ||||||||| | |||||| | || || | ||||||||| Sbjct 1481163 CAGAGGCTGATTTTTGCCGGAAAACAACTCGAGGATGGGCGTACGCTCTCAGATTATAAC 1481104 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 |||||||| ||||| ||||||||||||||| | | || |||| ||||| ||| |||| Sbjct 1481103 ATTCAAAAGGAATCGACTTTGCATTTGGTTCTCAGGTTGAGAGGAGGTATGCAAATATTC 1481044 Query 124778 ATAAA 124782 |||| Sbjct 1481043 GTAAA 1481039 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || ||| ||||||| ||||| || || | || | ||| | Sbjct 1480600 AATGCAAATCTTTGTGAAAACATTAACAGGGAAAACAATCACCTTGGAAGTCGAACCTTC 1480541 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| || ||||| ||||||||||| ||||||||||| || || ||||| Sbjct 1480540 TGATACAATTGAAAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGATCA 1480481 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | |||||||| || |||||| | || ||| |||| |||||| |||||| || Sbjct 1480480 GCAGAGATTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGTACATTATCAGATTACAA 1480421 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||||||||| || | || | |||||| | | |||| ||||| Sbjct 1480420 TATCCAAAAAGAATCCACACTCCACCTTGTTTTAAGGCTCAGAGGAGGTAT 1480370 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| ||||||| | ||||||||||| || ||| | ||| | ||| || Sbjct 1481055 ATGCAAATATTCGTAAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTCGAACCATCC 1480996 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || || ||||| ||||||||||| || ||||| |||||| Sbjct 1480995 GACACAATTGAAAATGTTAAGGCCAAGATTCAGGATAAAGAAGGCATCCCACCAGATCAA 1480936 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || || || |||||||| || || ||| | || || | || || ||| Sbjct 1480935 CAGAGGTTAATCTTCGCTGGAAAACAGTTGGAAGATGGACGCACTCTTTCGGACTACAAT 1480876 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || | || | ||||| | | |||| ||||| Sbjct 1480875 ATTCAAAAAGAATCCACCCTTCACCTCGTTTTGAGGCTGAGAGGAGGTAT 1480826 Score = 123 bits (136), Expect = 4e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || |||| || ||||| || ||| | || | ||| || Sbjct 1463883 AATGCAAATCTTTGTTAAAACCTTAACTGGTAAAACAATTACTTTGGAAGTAGAACCATC 1463824 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| |||||| ||| | ||| || || || |||||||||||||| || || ||||| Sbjct 1463823 TGACACAATTGAAAATGTGAAAGCTAAGATCCAGGATAAAGAAGGTATTCCTCCAGATCA 1463764 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| || |||||| | || ||| ||||||| | || || || Sbjct 1463763 GCAAAGGCTTATCTTTGCCGGTAAACAACTTGAAGATGGTCGAACTCTTTCCGACTACAA 1463704 Query 124718 TATTCAAAAAGAATCAAC 124735 ||||| |||||||| || Sbjct 1463703 CATTCAGAAAGAATCGAC 1463686 Score = 123 bits (136), Expect = 4e-23 Identities = 170/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || ||||| || || || ||| | || | || | | Sbjct 1481511 ATGCAGATCTTCGTGAAGACTCTTACAGGAAAGACCATCACTTTGGAAGTCGAGCCTTCT 1481452 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | ||| || |||||||||||||| ||||| || || ||||| Sbjct 1481451 GATACAATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGTATTCCTCCAGATCAG 1481392 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | |||||||||||||| ||| | || || | |||||| | |||||||| Sbjct 1481391 CAGAGGTTGATTTTTGCAGGAAAGCAACTTGAAGACGGCCGAACACTTTCCGATTATAAC 1481332 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| |||||||| || | ||| | || || | || ||||| || || ||| || Sbjct 1481331 ATTCAGAAAGAATCTACCCTCCATCTTGTATTGAGATTGCGAGGAGGGATGCAAATTT 1481274 Score = 123 bits (136), Expect = 4e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 |||||||| || ||| | || || | || || ||||| || || | || |||| | Sbjct 1481970 ACAATGCAGATCTTTGTGAAAACTTTGACCGGAAAAACCATCACATTGGAAGTTGAGCCT 1481911 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||||||| ||| | || ||||| || || ||||||||||| || || || Sbjct 1481910 TCAGATACAATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGTATCCCGCCAGAC 1481851 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 ||||||||||| ||||| || || || ||| | |||||| || |||| | |||||| Sbjct 1481850 CAACAAAGGCTGATTTTCGCTGGCAAGCAACTTGAGGATGGTAGAACTCTCTCGGATTAT 1481791 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| ||||| ||| |||| ||||| | ||| | ||||||| || Sbjct 1481790 AACATTCAAAAGGAATCGACTCTGCACTTGGTCCTCCGTCTCAGAGGTGGGAT 1481738 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || ||||||| || || || ||| | || | ||| || Sbjct 1480827 ATGCAAATCTTTGTGAAAACTTTAACAGGAAAGACGATCACTCTTGAAGTCGAACCATCG 1480768 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||||||| |||||||||||||| ||||| || || Sbjct 1480767 GATACGATTGAAAATGTCAAAGCGAAAATTCAGGATAAAGAAGGTATCCCACCAGACCAG 1480708 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || ||||| ||| | || || | |||||||| Sbjct 1480707 CAGAGGCTCATCTTTGCCGGTAAGCAGTTAGAAGATGGGCGCACTCTTTCTGATTATAAC 1480648 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| | ||| | || || | | || ||||| || Sbjct 1480647 ATCCAGAAAGAATCCACTCTTCATCTTGTCCTAAGGCTCCGTGGTGGAAT 1480598 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || |||||||| || ||| | || | || || Sbjct 1480143 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACTCTCGAAGTCGAGCCATCA 1480084 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || ||||| ||||| |||||||||||||| || || || ||||| Sbjct 1480083 GATACCATTGAAAACGTAAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCAGATCAG 1480024 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || || ||| | || ||| |||| ||| | ||||| ||| Sbjct 1480023 CAAAGGCTCATCTTTGCCGGCAAGCAACTGGAAGATGGTCGTACACTCTCCGATTACAAT 1479964 Query 124719 ATTCAAAAAGAATCAACT 124736 ||||| |||||||| ||| Sbjct 1479963 ATTCAGAAAGAATCTACT 1479946 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || ||||||| |||| ||||| ||||| || | || | || | Sbjct 1481739 ATGCAGATCTTCGTAAAGACTTTAACCGGCAAGACTATTACACTTGAAGTAGAGCCTTCC 1481680 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || |||||||||||||| || || || ||||| Sbjct 1481679 GACACTATTGAAAATGTCAAGGCAAAGATCCAAGATAAAGAAGGAATCCCCCCAGATCAG 1481620 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||| || |||||||| | || ||| ||||||| | || ||||| Sbjct 1481619 CAGAGGTTGATTTTCGCTGGAAAACAGCTTGAAGATGGTCGAACCCTTTCTGACTATAAC 1481560 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||||||||||||||| Sbjct 1481559 ATTCAAAAAGAATCAAC 1481543 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || |||| || ||||| || || | || | ||| || Sbjct 1463655 AATGCAAATTTTTGTTAAAACCTTAACTGGTAAAACAATCACCTTGGAAGTAGAACCATC 1463596 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| |||||| ||| | ||| || |||||||||||||| ||||| || || ||||| Sbjct 1463595 TGACACAATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGTATTCCTCCAGATCA 1463536 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGA 124693 || ||| | |||||||||||||| ||| | || || Sbjct 1463535 GCAGAGGTTGATTTTTGCAGGAAAGCAACTTGAAGA 1463500 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||| ||||||||||| || ||||| |||||||| ||| | || || || |||||| Sbjct 1464026 AAGATTCAGGATAAAGAAGGCATCCCACCAGATCAACAGAGGTTAATCTTCGCCGGAAAA 1463967 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735 || || || ||| | || || | |||||||| ||||| ||||||||||| Sbjct 1463966 CAGTTGGAAGATGGACGCACTCTTTCGGATTATAACATTCAGAAAGAATCAAC 1463914 >seq3 Length=17889087 Score = 140 bits (154), Expect = 5e-28 Identities = 240/347 (69%), Gaps = 5/347 (1%) Strand=Plus/Minus Query 205440 ATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTAC 205499 ||| || | ||| |||||||| || || || | | ||| || |||| |||||||| || Sbjct 15712277 ATTTGTAACATGAGCAATCATGTATGTTAAAAGAGCATAGCTTGCAATGTTAAATGGAAC 15712218 Query 205500 ACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATT-ATTAA 205558 ||||| ||||| || || ||||| ||||||| || || ||||| || ||| Sbjct 15712217 TCCTAAGCCCATGTCTGCCGATCTCTGATACAGCTGGCA----AGATAATTCGCCATTTG 15712162 Query 205559 TTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAG 205618 |||| ||||||||| |||||||| ||||| |||| | |||| || || | || |||| Sbjct 15712161 CAACATAAAATTGTACCAAACAATGGCAAGGGGGTAGAGCCATCTTGTCTAAATGCATAG 15712102 Query 205619 GATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAA 205678 |||||||||| | || || ||| | || || |||| || | ||||| | Sbjct 15712101 GATTCCAGGCGCACATAATCATCCTTCGGTCATTGGGATTGGTTTTAATAGTGTTTATTA 15712042 Query 205679 TATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAG 205738 | ||||||| || | ||||| ||| |||| ||| | ||| || |||| | | Sbjct 15712041 CAGCCATTAATTGGTCGACACCTTGTCCTGTGTAATCTGTGTGCATGTCTTTATAATCGG 15711982 Query 205739 CACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 | || ||||| | ||| ||||| |||||||| || || | ||| ||| Sbjct 15711981 CTCCGAAATGCCTCCACTGAAATCCATAAACAGGCCCAAGATCCCCT 15711935 >seq89 Length=3091062 Score = 100 bits (110), Expect = 4e-16 Identities = 233/348 (67%), Gaps = 9/348 (3%) Strand=Plus/Minus Query 205353 ACGTTCTAATTGtttttttAATCCATTAATATGATTAACATATATATGTGCATTACCAAT 205412 |||| ||||||| ||| || ||| |||||||| || ||||| |||| ||||| Sbjct 2013513 ACGTGATAATTGTGTTTCTATCGCATCGATATGATTTGAGTAAATATGAGCATCACCAAA 2013454 Query 205413 ATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAA 205472 | |||| | |||||| || |||| | | | || || | | || ||||| Sbjct 2013453 AGTATGCACAAATTCTCCGACTTCTAAACCACATTCTTTAGCTATTAAGTGCGTTAATAA 2013394 Query 205473 ACTATAACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACAT 205532 ||||||||| |||| |||||||| |||||||| |||||||| ||| ||||| | Sbjct 2013393 ACTATAACTTGCAATGTTAAATGGCACACCTAAGAATATATCAGCACTTCTCTGATATAA 2013334 Query 205533 TTGACATGTAAGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGG 205592 ||| || | | || || | || | |||| |||||| | | ||| || ||||| Sbjct 2013333 TTGGCAACTCA-ATTTTCCATCTTGA--ACATAAAATTGGAACATCGTATGGCATGGTGG 2013277 Query 205593 TATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCT---AGA 205649 || | |||| | |||| || | |||||||| || | | || |||| ||| ||| Sbjct 2013276 TAAAGCCATTGTATCAATTTCAGTTGGATTCCACGCAG---AAATGATATGTCTACGAGA 2013220 Query 205650 TTCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAA 205697 | ||| |||||||| |||| ||| || | | |||| ||||| || Sbjct 2013219 ATTAGGGTTATTTTTAATTTGATTAATTACTGTTTTTAACTGATCGAA 2013172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755442760633600