Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_002321.1 Length=41401 Score E Sequences producing significant alignments: (Bits) Value seq89 183 8e-42 >seq89 Length=3091062 Score = 183 bits (202), Expect = 8e-42 Identities = 241/330 (73%), Gaps = 3/330 (1%) Strand=Plus/Minus Query 34654 TAAATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACC 34713 ||||||||||| ||| | ||||| ||||||||||| | ||| ||||||| || || Sbjct 140634 TAAATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACA 140575 Query 34714 ACTCAAAGTGGTGTAAATGTAGCATCATTCACATTAGCAGTTAACCGTACATTTACAAAT 34773 || | || || | ||| || | || || ||||||| |||||||| ||||||||| Sbjct 140574 ACACCCTCAGGCGTGAGTGTTGCGACTTTTACTCTAGCAGTAAACCGTACGTTTACAAAT 140515 Query 34774 GCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTATTTAAAAAACAAGCAGAG 34833 || ||||| || ||||| ||||| || || ||| |||| |||| |||||||||||| Sbjct 140514 GCGCAAGGGGAACGCGAAGCAGATTTCATTAATTGTGTCGTTTTTAGAAAACAAGCAGAT 140455 Query 34834 AACGTTAATAAATACCTATCTAAAGGATCGTTGA-CGGGCGTAGATGGTAGGTTACAAAC 34892 || || ||||| ||| | | ||||| | ||| | ||||||| || ||| | | ||| | Sbjct 140454 AATGTAAATAACTACTTGTTCAAAGG-TAGTTTAGCGGGCGTTGACGGTCGCATTCAATC 140396 Query 34893 GCGGAATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAG 34952 || | |||||||| | ||||| | ||||| | ||| || ||||| || |||||| Sbjct 140395 ACGTAGCTATGAAAACCAAGAAGGACGTCGTGTTTTTGTAACTGAAGTAGTTTGTGATAG 140336 Query 34953 TATTCAATTTTTAGAACCGAAAAACTCAAA 34982 ||||||| | ||||| ||||| ||||| Sbjct 140335 CGTTCAATTCCTTGAACCTAAAAA-TCAAA 140307 Score = 114 bits (126), Expect = 3e-21 Identities = 450/696 (65%), Gaps = 65/696 (9%) Strand=Plus/Minus Query 24896 TTAGTATATGATCACGTATCTGTAGGACTTGGTTCATTTCTAAATAGTTGTACATTTTAG 24955 ||| |||| |||||||| | || ||||| ||||||| | |||||| || ||||| Sbjct 2303699 TTAATATAAATTCACGTATTTTTAACACTTGAATCATTTCAAGATAGTTATATATTTTT- 2303641 Query 24956 ATTCATCTTTTTCGATATCCTCTATTGTTTTTCTTCTTTTAGGAATTTTGACATTAGTTA 25015 ||| |||||||| ||||| |||| ||||| | | ||| | | || |||| | ||| Sbjct 2303640 -TTCTTCTTTTTCAATATCTTCTAGAGTTTTAGCTTTCTTAAGTACTTCTACATCATTTA 2303582 Query 25016 ACAAATATTCATTTGGATAATTGTAAAATTTAACTGCATATTTAATAGCTCCTTTCATAT 25075 ||| || | ||| | || | |||||||| ||||||| | |||| |||||||| Sbjct 2303581 ACATATGCTTATTAGTGTATCTATAAAATTTCGTTGCATATGCTAAAGCTTTTTTCATAT 2303522 Query 25076 CTCCGAGTTGACGGGTTACTTGATTTTGAGAATAGATATCTGATAATTTATTAATAAATA 25135 | ||||| || | ||||| |||| ||||| || | |||||| |||| || | | Sbjct 2303521 CATTAAGTTGTCGTATAACTTGGTTTTCTGAATAAATTTTAGATAATGTATTGATTAGTT 2303462 Query 25136 TCTGCATATATTTTGTATCTAGTTTGTTTAAAAGCAAGTTCTCAGAGCTGTATCGTTTAA 25195 | || | || |||| |||||| || | ||| || || |||| | || | Sbjct 2303461 TTTGGACATGTTTTACATCTAGCTT---TGAAA-------CT---AG-TGTA--GATTCA 2303418 Query 25196 TGTTTCTAATTCTTATTTTTATATTATTAAGAGTAGTCAACTTTGAACCTGATGTTTTTA 25255 | ||| ||||| | | |||| |||| | | ||| Sbjct 2303417 T----CTA-----TATTTCTCT----TTAA---------------AACCAGGCCTATTTT 2303386 Query 25256 TATGATATTCAAGCCATTCATCTAATAGCGCGTGAAAAGTCAAAGTTTTTAATTCGCTTG 25315 |||||||| || ||||| ||||||| |||| || || | ||||| || Sbjct 2303385 TATGATATGTAAACCATTGGTCTAATAAATTATGAATCGTTAATTCCTCTAATTTA-TTA 2303327 Query 25316 ACGACTTGTTGTTCAGt----ttttcttttattttttCTTCTAAACGAAACATTGCTTCT 25371 | || | ||||| || | |||||| | || ||||| | || | | |||| Sbjct 2303326 TTG---TGATTATCAGTAATCTTATTTTTTATCCTATCATCTAATTGGAATAAAGATTCT 2303270 Query 25372 TTTTGAGATTGTTTTGTATTCTTGTTCAACACAACACTTACGC-GCTTCCATTTATCTGT 25430 || ||||| ||| |||| ||||||| ||||||| ||| | || || ||||||| || Sbjct 2303269 TTCTGAGAAATTTTAGTATCTTTGTTCATTACAACACATACTCTGCGTC-ATTTATCCGT 2303211 Query 25431 GTATGGATCTTTGTACTTCTCGTAATATCTGTATTTAGTTTCGTTAtttttgtttttaaa 25490 |||| ||||| ||||||| || | | ||||||||||| | ||| | |||||| Sbjct 2303210 GTATAAGTCTTTATACTTCTTATATAAGCGGTATTTAGTTTTGCCTGCTTTATCTTTAAA 2303151 Query 25491 tttttCAATCCACAT-GTTTATACCTCCT----GTAGGAACGTACGTTC--TGTAAATTT 25543 || ||| |||||| | ||| |||||| | ||||||| |||| | |||| | Sbjct 2303150 TTGTTCTGACCACATAATGTATTCCTCCTTACATTTAGAACGTAAGTTCAATATAAAGAT 2303091 Query 25544 GTAAAAAATAATAAGGGTAGGTGG-GCTACCCAAAA 25578 || ||||||| |||| || || || ||||||| Sbjct 2303090 -TAGAAAATAAATAGGGCAGTAGGAACTGCCCAAAA 2303056 Score = 96.9 bits (106), Expect = 9e-16 Identities = 125/169 (74%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 24245 AAGCGTTTTATAAAGCTTGTAAAAAATA---TAAGGGCaaaaaaaGGGCAGATTTAAGCT 24301 ||| |||||||| | |||| ||||| ||||| || ||||||||||||| | | Sbjct 2303995 AAGGGTTTTATA--GGTTGTTCAAAATTAACTAAGGTCAGAAAAAGGGCAGATAGAT--T 2303940 Query 24302 AACTTGGAATGTTTTCGAGTTTTTGAGTTAGTTCTCTATCCATTTTTTCAGTTACATGAG 24361 |||||||||| ||||| | ||| | |||| | | | |||| |||||| |||| ||| | Sbjct 2303939 AACTTGGAATATTTTCAAATTTCTAGGTTAACTGTTTGTCCA-TTTTTCTGTTAAATGCG 2303881 Query 24362 TATATATGCGAATGGTTGTTTTTTCATCTACATGTCCTACCCTTTTCAT 24410 | ||||| |||| || |||||||| || ||| || || |||||||| Sbjct 2303880 TGTATATTTGAATAGTAGTTTTTTCGTCAGTATGACCAACTCTTTTCAT 2303832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132359396344812