Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_002486.1 Length=45636 Score E Sequences producing significant alignments: (Bits) Value seq89 439 7e-119 >seq89 Length=3091062 Score = 439 bits (486), Expect = 7e-119 Identities = 510/674 (76%), Gaps = 29/674 (4%) Strand=Plus/Plus Query 22896 TGGGACATAAATCCCTaaaaaaaCAGCAGTAAGATAATTTTCAATTAGAAAATATCTTAC 22955 ||||||||||||||| | ||||| |||| | |||| |||| |||| || |||| | Sbjct 2310809 TGGGACATAAATCCC-AGAAAAATAGCACTCAGATGATTT--AATTC-AATTCATCTGAG 2310864 Query 22956 TGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTT-CGCTTTCCTAGGGTGCCG 23014 |||| ||| | ||| | |||||||||||||| | ||||| ||||||| || | | | Sbjct 2310865 TGCT--TCTTT-TTTGTTCAATACTTCGTATT-ATTGGCTCGCGCTTTCTTAAAGGACAG 2310920 Query 23015 TCTCAGCCT-TGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACG 23073 |||| | | |||||| || ||| | ||||| ||||||||| | |||| || Sbjct 2310921 CTTCAGATTGTAGTCTTCTGCTTATCCTGTTACCTCAAGAGTCTCGCAA--AATATGTCG 2310978 Query 23074 TATTAACATGTAATTTTACTTTGAAATACTTTaaaaaaaTAAGACACTTTCGTATAATTT 23133 || | |||||||||||| || ||||| || ||| ||||| | || || ||||||| Sbjct 2310979 CATACATATGTAATTTTACATTAAAATA--TTGAAAGGATAAGGTAGTTACGAATAATTT 2311036 Query 23134 AATAAATACCACTAAACTAAATTAACGAGGTGCCTTATGTATAAAAATTATAACATGACC 23193 ||||||||| | ||||||||| ||||||| ||| |||||||||||||||| ||||| Sbjct 2311037 AATAAATACTAATAAACTAAA----CGAGGTGTCTTTTGTATAAAAATTATAATATGACT 2311092 Query 23194 CAACTTACACTACCAATAGAAACTTCTGTTAGAATTCCTCAAAATGATATTTCACGATAT 23253 ||||||||||||||||| |||||||| ||| || || ||||||||| |||| |||| Sbjct 2311093 CAACTTACACTACCAATGGAAACTTCAGTTCTTATACCCACAAATGATATGTCACTATAT 2311152 Query 23254 GTTAATGAAGTTGTTGAAACGATACCTGATAGCGAATTCGATGAATTCAGACATCATCGT 23313 |||| |||| |||||||| | |||| | ||||||||| |||| ||||| Sbjct 2311153 GTTACTGAAACCGTTGAAACAACCCCTGCAA---------ATGAATTCAAACATTATCGT 2311203 Query 23314 GGCGCAACATCCTATCATCCAAAAATGATGTTAAAAATTATCTTATATGCATACACTCAA 23373 || || ||||| |||||||| | ||| | ||||||| |||| ||||||| ||| | ||| Sbjct 2311204 GGTGCTACATCATATCATCCTATAATAAGGTTAAAACTTATTCTATATGCTTACGCACAA 2311263 Query 23374 TCTGTATTTTCTGGTCGTAGAATAGAGAAATTACTTCATGACAGTATTCGAATGATGTGG 23433 || |||| || |||||| || ||| ||||| ||| || ||||| |||||||||||| Sbjct 2311264 TCCGTATCGCCTAGTCGTAAAACAGAAAAATTGCTTAGTGGTAGTATCCGAATGATGTGG 2311323 Query 23434 TTAGCTCAAAATCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTAAATCCTAAT 23493 || | |||||||||||| ||| ||||||||| ||||||||||||| |||||||||| | Sbjct 2311324 CTATCACAAAATCAAACAACTTTTTATAAAACAATTAATCGTTTTAAAGTAAATCCT-GT 2311382 Query 23494 ACT-GATGCATTAATTGAATCTTTATTTATTCAGTTTCATAGTCAATGTTTAAAGCAAAA 23552 | | |||| || | |||| ||||||||||| ||||| ||||||| | | ||||| Sbjct 2311383 AGTAGATGTCCTATTAAAATCATTATTTATTCAATTTCACGATCAATGTCTGTAACAAAA 2311442 Query 23553 TCTTATTGATGATA 23566 |||||| |||||| Sbjct 2311443 TCTTATAAATGATA 2311456 Score = 244 bits (270), Expect = 3e-60 Identities = 245/318 (77%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 8366 AATGTTAAACAGAACGGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAAC 8425 |||| |||| ||| || ||||| || || ||||| ||||||||||||||||||||||| Sbjct 140632 AATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAAC 140573 Query 8426 GCCGAATGGTGTGAGTGTTACCACTTTCACTATCGCAGTTAACAGAACATTTACTAACGC 8485 || || ||||||||| | ||||| ||| | ||||| ||| | || ||||| || || Sbjct 140572 ACCCTCAGGCGTGAGTGTTGCGACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGC 140513 Query 8486 TCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTTTTAGAAAACAAGCAGAAAA 8545 ||||| ||||| || ||||| || ||||| ||||| |||||||||||||||||| || Sbjct 140512 GCAAGGGGAACGCGAAGCAGATTTCATTAATTGTGTCGTTTTTAGAAAACAAGCAGATAA 140453 Query 8546 TGTAAATCATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACG 8605 ||||||| | || || | |||||| || || |||||||| || || | |||||||| Sbjct 140452 TGTAAATAACTACTTGTTCAAAGGTAGTTTAGCGGGCGTTGACGGTCGCATTCAATCACG 140393 Query 8606 CAGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGT 8665 || ||||||||| |||| || | ||||| ||||| || |||||||| || || || Sbjct 140392 TAGCTATGAAAACCAAGAAGGACGTCGTGTTTTTGTAACTGAAGTAGTTTGTGATAGCGT 140333 Query 8666 TCAATTCTTAGAACCGAA 8683 ||||||| | ||||| || Sbjct 140332 TCAATTCCTTGAACCTAA 140315 Score = 172 bits (190), Expect = 2e-38 Identities = 240/324 (74%), Gaps = 13/324 (4%) Strand=Plus/Plus Query 22897 GGGACATAAATCCCTaaaaaaaCA-GCAGTAAGATAATTTTCAATTAGAAAATATCTTAC 22955 ||| |||||||||| |||||| | ||| | | || |||| |||| || |||| | Sbjct 2841593 GGGGCATAAATCCCAGAAAAAAGAAGCACTCAAATGATTT--AATTC-AATTCATCTGAG 2841649 Query 22956 TGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGT 23015 |||| ||| | ||||| |||||||||||||||| ||| ||||||||| || | | | Sbjct 2841650 TGCT--TCTTTTTTTATTCAATACTTCGTATTGA-TGG-TTCGCTTTCTCAGAGGACAGA 2841705 Query 23016 CTCAGCCTTGGTCTTCGA-CTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGT 23074 ||||||| || || | || | ||| | ||||| ||||||| || || || ||| Sbjct 2841706 TTCAGCCT--GTAATCCAGCTTGTCCTGTTTCCTCAAGAGTCTCATCAA-AACACGTCGT 2841762 Query 23075 ATTAACATGTAATTTTACTTTGAAATACTTTaaaaaaaTAAGACACTTTCGTATAATTTA 23134 || |||| ||||||| || ||||||||| |||||||||| | ||| |||||||||| Sbjct 2841763 GTTCCTATGTTATTTTACATTAAAATACTTTTAAAAAATAAGGCCCTTACGTATAATTTG 2841822 Query 23135 ATAAATACCACTAAACTAAATTAACGAGGTGCCTTATGTATAAAAATTATAACATGACCC 23194 || ||||| | |||||||||||||| | | ||||||| ||||| |||||| |||| Sbjct 2841823 ATCAATACGATTAAACTAAATTAACAAAGCGCCTTATAAATAAAGGTTATAAATTGACTT 2841882 Query 23195 AACTTACACTACCAATAGAAACTT 23218 | | |||||| ||| ||||||| Sbjct 2841883 AGCACACACTATTAAT-GAAACTT 2841905 Score = 156 bits (172), Expect = 1e-33 Identities = 195/255 (76%), Gaps = 12/255 (5%) Strand=Plus/Plus Query 22901 CATAAATCCCTaaaaaaaCAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTG 22960 |||||||| ||||||| |||| | |||| |||| |||| || |||| | |||| Sbjct 2386485 CATAAATCTA-AAAAAAATAGCACTTAGATGATTT--AATTC-AATTCATCTAAGTGCT- 2386539 Query 22961 TTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAG 23020 ||| | ||||| ||||||||||||||| ||||| ||||||| ||| || ||| Sbjct 2386540 -TCTTT-TTTATTCAATACTTCGTATTGT-TGGCT-CGCTTTCTTAGTGTATATCTTCAC 2386595 Query 23021 CCT-TGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAA 23079 ||| | |||||| ||| || |||| ||||| || ||||| || ||||| || ||||| Sbjct 2386596 CCTGTAGTCTTCAACTTGCCCTGCCCCCTCGAGAATCTCGTCAA-AATACATCGCATTAA 2386654 Query 23080 CATGTAATTTTACTTTGAAATACTTTaaaaaaaTAAGACACTTTCGTATAATTTAATAAA 23139 |||||||||| | || |||||||| |||| |||||| ||| |||||||||||||||| Sbjct 2386655 CATGTAATTTGATATTAAAATACTTGAAAATT-TAAGACCCTTACGTATAATTTAATAAA 2386713 Query 23140 TACCACTAAACTAAA 23154 || ||||||||||| Sbjct 2386714 CACTACTAAACTAAA 2386728 Score = 105 bits (116), Expect = 2e-18 Identities = 178/247 (72%), Gaps = 13/247 (5%) Strand=Plus/Minus Query 22895 CTGGGACATAAATCCCTaaaaaaaCAGCAGTAAGATAATTTTCAATTAGAAAATATCTTA 22954 |||| ||||||||| | ||||| || | | || | |||| |||| || |||| | Sbjct 2170302 CTGGAACATAAATCTCAGCAAAAA-AGTACTCAGGTGATTT--AATTC-AATTCATCTGA 2170247 Query 22955 CTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCG 23014 |||| || | |||| ||||||||||||||| |||| || ||||| ||||| | Sbjct 2170246 GTGCTTTTTTGTATT----CAATACTTCGTATTG-CTGGC-TCTCTTTCATAGGGATTAG 2170193 Query 23015 TCTCAGCCT-TGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACG 23073 ||||||| | |||||| || | || ||||| | ||||||||||| ||||| | Sbjct 2170192 CTTCAGCCTGTAGTCTTCAGCTTGTCCTATTCCCTTAAGAGTCTCGCCA-AAATACGTTG 2170134 Query 23074 TATTAACATGTAATTTTACTTTGAAATAC-TTTaaaaaaaTAAGACACTTTCGTATAATT 23132 ||| | || |||||| || |||| | |||||||||||| || |||| ||||| ||| Sbjct 2170133 TATCCATATAGCATTTTATATTAAAATGCTTTTAAAAAAATACGAGACTTACGTATTATT 2170074 Query 23133 TAATAAA 23139 ||||||| Sbjct 2170073 TAATAAA 2170067 Score = 104 bits (114), Expect = 7e-18 Identities = 232/338 (69%), Gaps = 34/338 (10%) Strand=Plus/Minus Query 22896 TGGGACATAAATCCCTaaaaaaaCAGCAGTAAGATAATTTTCAATTAGAAAATATCTTAC 22955 |||||||||| ||| | ||||| |||| | |||| ||| | || || |||| | Sbjct 947153 TGGGACATAA--CCCCAGAAAAATAGCACTCAGATGGTTT---AATACAATTCATCTGAG 947099 Query 22956 TGCT--GTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCC 23013 |||| ||| ||||| ||||||||||||||| | |||| |||| ||||| || Sbjct 947098 TGCTTAGTT-----TTTATTCAATACTTCGTATTG-TTAGCTT-ACTTTTTTAGGGAGCA 947046 Query 23014 GTCTCAGCCT-TGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTAC 23072 | |||| || | |||||| || | ||| | ||||| ||||||||||| ||||| | Sbjct 947045 GCTTCAGTCTGTAGTCTTCTGCTTGTCCTGTTTCCTCAAGAGTCTCGCCA-AAATACGTC 946987 Query 23073 GTATTAACATGTAATTTTACTTTGAAATACTTTaaaaaaaTAAGACACTTTCGTATAATT 23132 | ||| | ||| ||| | || | | |||| |||||||| || | | || ||||| | Sbjct 946986 GCATTTATATGGAATCTCACATCAAGATAC--TAAAAAAACAATGCCCATTTGTATAGT- 946930 Query 23133 TAATAAATACCACTAAACTAAATTAACGAGGTGCCTTATGTATAAAAATTATAACATGAC 23192 || | |||| || |||| | || ||| |||||| ||| |||||| | Sbjct 946929 -----AAAATTACTATAC-AAAT-------GGGCATTA--TATAAATTTTAAAACATGGC 946885 Query 23193 CCAACTTACACTACCAATAGAAACTTCTGTTAGAATTC 23230 ||||| | | ||||||| ||||||||| || ||||| Sbjct 946884 TCAACTAATATTACCAATTGAAACTTCTATTTTAATTC 946847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145911170720952