Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq46 118 2e-21 >seq46 Length=4728336 Score = 118 bits (130), Expect = 2e-21 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || ||||| || | || | || |||||||| ||||| |||||||| Sbjct 1480373 CCTCCTCTGAGCCTTAAAACAAGGTGGAGTGTGGATTCTTTTTGGATATTGTAATCTGAT 1480432 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || | |||||| || |||||||||||||| |||||||| ||||| Sbjct 1480433 AATGTACGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAATCTCTGCTGATCTGGAGGG 1480492 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| ||||| ||| ||| ||| Sbjct 1480493 ATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTTTCAATTGTATCAGAAGGTTCGACT 1480552 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || | ||||||||||| |||||||||||||| | || ||||||||| Sbjct 1480553 TCCAAGGTGATTGTTTTCCCTGTTAATGTTTTCACAAAGATTTGCATT 1480600 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| | ||| ||||| | ||| | ||||||||||| || |||||||| ||| Sbjct 1481285 CCTCCTCGCAATCTCAATACAAGATGGAGGGTAGATTCTTTCTGAATGTTATAATCGGAA 1481344 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| || || || | ||| ||||| ||||||||||| || |||||||| |||||| Sbjct 1481345 AGTGTTCGGCCGTCTTCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGA 1481404 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||||||||| Sbjct 1481405 ATACCCTCTTTATCTTG 1481421 Score = 107 bits (118), Expect = 3e-18 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || || || || | || | || |||||||| || || || || | Sbjct 1463654 TTCCACCTCTGAGCCTCAAGACAAGGTGAAGTGTCGATTCTTTCTGAATGTTGTAGTCGG 1463713 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||||| | ||| || | |||||| || ||||| || | ||||||||||| |||| Sbjct 1463714 AAAGAGTTCGACCATCTTCAAGTTGTTTACCGGCAAAGATAAGCCTTTGCTGATCTGGAG 1463773 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| ||||||||||| || || || || ||||| Sbjct 1463774 GAATACCTTCTTTATCCTGGATCTTAGCTTTCACATTTTCAATTGTGTCAGATGGTTCTA 1463833 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| | || ||||||||||| ||||| ||||||| || ||||||||| Sbjct 1463834 CTTCCAAAGTAATTGTTTTACCAGTTAAGGTTTTAACAAAGATTTGCATT 1463883 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || ||||| | || | |||||||| ||||| ||||| ||| || || ||||||||||| Sbjct 1481057 CCTCCTCTCAACCTGAGAACCAAATGCAAAGTCGATTCCTTTTGA-ATGTTATAATCTGA 1481115 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || | | ||| || | ||||||||| |||||||||| || ||||| || || || Sbjct 1481116 GAGCGTACGCCCATCCTCGAGTTGTTTTCCGGCAAAAATCAGCCTCTGCTGGTCTGGGGG 1481175 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| |||||||| ||||| Sbjct 1481176 AATGCCTTCTTTGTCTTG 1481193 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||| || || | || | || |||||||| || ||||| || ||| Sbjct 1481513 CCTCCTCTCAATCTCAACACAAGGTGGAGGGTTGATTCTTTTTGAATGTTATAGTCAGAA 1481572 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || | ||||||||||| |||||||| || |||||||| || || Sbjct 1481573 AGGGTTCGACCATCTTCAAGCTGTTTTCCAGCGAAAATCAACCTCTGCTGATCTGGGGGG 1481632 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 1481633 ATTCCTTCTTTATCTTG 1481649 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| ||||| | ||| | || | |||||||||||| ||||| ||||| || Sbjct 1479917 CCTCCTCGGAGTCTCAGTACGAGGTGGAGAGTAGATTCTTTCTGAATATTGTAATCGGAG 1479976 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | ||| || || ||||| || | ||||||||||| || ||| Sbjct 1479977 AGTGTACGACCATCTTCCAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGATCTGGGGGA 1480036 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 1480037 ATTCCTTCTTTATCTTG 1480053 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| || || || || | ||| | || |||||||| || |||||||| | Sbjct 1463882 TTCCGCCTCTGAGCCTCAAGACAAGATGAAGTGTTGATTCTTTCTGAATGTTATAATCCG 1463941 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | ||| || || |||||||| || || || || || || ||||| || | Sbjct 1463942 AAAGAGTGCGTCCATCTTCCAACTGTTTTCCGGCGAAGATTAACCTCTGTTGATCTGGTG 1464001 Query 146169 GAATTCCTTCTTTATCTTG 146187 | || ||||||||||| || Sbjct 1464002 GGATGCCTTCTTTATCCTG 1464020 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || || || || | ||| | ||| |||||||| || || ||||| ||| Sbjct 1480145 CCGCCTCTGAGCCTCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCCGAA 1480204 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | || || ||||| |||||||||||||| || || ||||| || ||||| Sbjct 1480205 AGTGTGCGTCCGTCTTCCAATTGCTTTCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGG 1480264 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 1480265 ATCCCTTCCTTATCCTG 1480281 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||||||| || | ||||| || | || |||||||| || || || || ||| Sbjct 1570483 CCTCCTCTAAGCCTAAGCACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGAA 1570424 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | || ||||| ||||| |||||||| ||||| || || ||| Sbjct 1570423 AGAGTACGTCCATCCTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGGA 1570364 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 1570363 ATTCCTTCCTTGTCTTG 1570347 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/229 (66%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || |||| || | ||| | ||| |||||||| || |||||||| | Sbjct 1480599 TTCCACCACGGAGCCTTAGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTATAATCAG 1480658 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | ||| ||||| || || || ||||| || | || ||||| || || | Sbjct 1480659 AAAGAGTGCGCCCATCTTCTAACTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTG 1480718 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | || ||||||||||| || ||||| || ||| | Sbjct 1480719 GGATACCTTCTTTATCCTGAATTTTCGCTTTGACATTTTCAATCGTATCCGATGGTTCGA 1480778 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || ||||| || || |||||||| ||||| | || |||||||| Sbjct 1480779 CTTCAAGAGTGATCGTCTTTCCTGTTAAAGTTTTCACAAAGATTTGCAT 1480827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743513369699840