Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_002661.2 Length=42942 Score E Sequences producing significant alignments: (Bits) Value seq89 138 3e-28 >seq89 Length=3091062 Score = 138 bits (152), Expect = 3e-28 Identities = 447/683 (65%), Gaps = 62/683 (9%) Strand=Plus/Minus Query 709 TTAGTATATGATCACGTATCTGTAGGACTTGGTTCATTTCTAAATAGTTGTACATTTTAG 768 ||| |||| |||||||| | || ||||| ||||||| | |||||| || ||||| Sbjct 2303699 TTAATATAAATTCACGTATTTTTAACACTTGAATCATTTCAAGATAGTTATATATTTTT- 2303641 Query 769 ATTCATCTTTTTCGATATCCTCTATTGTTTTTCTTCTTTTAGGAATTTTGACATTAGTTA 828 ||| |||||||| ||||| |||| ||||| | | ||| | | || |||| | ||| Sbjct 2303640 -TTCTTCTTTTTCAATATCTTCTAGAGTTTTAGCTTTCTTAAGTACTTCTACATCATTTA 2303582 Query 829 ACAAATATTCATTTGGATAATTGTAAAATTTAACTGCATATTTAATAGCTCCTTTCATAT 888 ||| || | ||| | || | |||||||| ||||||| | |||| |||||||| Sbjct 2303581 ACATATGCTTATTAGTGTATCTATAAAATTTCGTTGCATATGCTAAAGCTTTTTTCATAT 2303522 Query 889 CTCCGAGTTGACGGGTTACTTGATTTTGAGAATAGATATCTGATAATTTATTAATAAATA 948 | ||||| || | ||||| |||| ||||| || | |||||| |||| || | | Sbjct 2303521 CATTAAGTTGTCGTATAACTTGGTTTTCTGAATAAATTTTAGATAATGTATTGATTAGTT 2303462 Query 949 TCTGCATATATTTTGTATCTAGTTTGTTTAAAAGCAAGTTCTCAGAGCTGTATCGTTTAA 1008 | || | || |||| |||||| || | ||| || || |||| | || | Sbjct 2303461 TTTGGACATGTTTTACATCTAGCTT---TGAAA-------CT---AG-TGTA--GATTCA 2303418 Query 1009 TGTTTCTAATTCTTATTTTTATATTATTAAGAGTAGTCAACTTTGAACCTGATGTTTTTA 1068 | ||| ||||| | | |||| |||| | | ||| Sbjct 2303417 T----CTA-----TATTTCTCT----TTAA---------------AACCAGGCCTATTTT 2303386 Query 1069 TATGATATTCAAGCCATTCATCTAATAGCGCGTGAAAAGTCAAAGTTTTTAATTCGCTTG 1128 |||||||| || ||||| ||||||| |||| || || | ||||| || Sbjct 2303385 TATGATATGTAAACCATTGGTCTAATAAATTATGAATCGTTAATTCCTCTAATTTA-TTA 2303327 Query 1129 ACGACTTGTTGTTCAGt----ttttcttttattttttCTTCTAAACGAAACATTGCTTCT 1184 | || | ||||| || | |||||| | || ||||| | || | | |||| Sbjct 2303326 TTG---TGATTATCAGTAATCTTATTTTTTATCCTATCATCTAATTGGAATAAAGATTCT 2303270 Query 1185 TTTTGAGATTGTTTTGTATTCTTGTTCAACACAACACTTACGC-GCTTCCATTTATCTGT 1243 || ||||| ||| |||| ||||||| ||||||| ||| | || || ||||||| || Sbjct 2303269 TTCTGAGAAATTTTAGTATCTTTGTTCATTACAACACATACTCTGCGTC-ATTTATCCGT 2303211 Query 1244 GTATGGATCTTTATACTTCTCGTAGTATCTGTATTTAGTTTCGTTAtttttgtttttaaa 1303 |||| ||||||||||||| || | | ||||||||||| | ||| | |||||| Sbjct 2303210 GTATAAGTCTTTATACTTCTTATATAAGCGGTATTTAGTTTTGCCTGCTTTATCTTTAAA 2303151 Query 1304 tttttCAATCCACAT-GTTTATACCTCC-TGCA---AGAACGTATGTTCTATA-AAATAT 1357 || ||| |||||| | ||| ||||| | || |||||||| |||| ||| ||| || Sbjct 2303150 TTGTTCTGACCACATAATGTATTCCTCCTTACATTTAGAACGTAAGTTCAATATAAAGAT 2303091 Query 1358 TAAAAAATAATAAGGGTAGTCGG 1380 || ||||||| |||| ||| || Sbjct 2303090 TAGAAAATAAATAGGGCAGTAGG 2303068 Score = 91.5 bits (100), Expect = 4e-14 Identities = 124/169 (73%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 58 AAGCGTTTTATAAAGCTTGTAAAAAATA---TAAGGGCaaaaaaaGGGCGGATTTAAGCT 114 ||| |||||||| | |||| ||||| ||||| || ||||||||| ||| | | Sbjct 2303995 AAGGGTTTTATA--GGTTGTTCAAAATTAACTAAGGTCAGAAAAAGGGCAGATAGAT--T 2303940 Query 115 AACTTGGAATGTTTTCGAGTTTTTGAGTTAGTTCTCTATCCATTTTTTCAGTTACATGAG 174 |||||||||| ||||| | ||| | |||| | | | |||| |||||| |||| ||| | Sbjct 2303939 AACTTGGAATATTTTCAAATTTCTAGGTTAACTGTTTGTCCA-TTTTTCTGTTAAATGCG 2303881 Query 175 TATATATGCGAATGGTTGTTTTTTCATCTACATGTCCTACCCTTTTCAT 223 | ||||| |||| || |||||||| || ||| || || |||||||| Sbjct 2303880 TGTATATTTGAATAGTAGTTTTTTCGTCAGTATGACCAACTCTTTTCAT 2303832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137290514246496