Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq46 107 1e-18 >seq46 Length=4728336 Score = 107 bits (118), Expect = 1e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 ||||||||| |||||||| |||||||||||||||| | ||| || |||||| | ||| Sbjct 1463679 GTGAAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCGACCATCTTCAAGTTG 1463738 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| ||||||| ||||| ||||| || | ||||| ||||| || | Sbjct 1463739 TTTACCGGCAAAGATAAGCCTTTGCTGATCTGGAGGAATACCTTCTTTATCCTGGATCT- 1463797 Query 18242 TTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 | || || || | | ||| |||||| || || ||| | || || |||| || | Sbjct 1463798 TAGCTTTCACATTTTCAATTGTGTCAGATGGTTCTACTTCCAAAGTAATTGTTTTACCAG 1463857 Query 18301 TCAATGTTTTTACAAAAATTTGCATT 18326 | || ||||| ||||| ||||||||| Sbjct 1463858 TTAAGGTTTTAACAAAGATTTGCATT 1463883 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || || | || | |||||| || |||||||||||||| |||||||| | Sbjct 1480829 CCTCCTCTCAGCCTCAAAACGAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCCGAA 1480888 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||| ||||| || || |||| | || |||||||| || Sbjct 1480889 AGAGTGCGTCCATCTTCCAACTGTTTTCCAGCGAAGATTAACCTCTGTTGATCTGGTGGG 1480948 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| ||||| ||| | ||| || | | ||| ||||| || ||| Sbjct 1480949 ATGCCTTCTTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTGTCGGATGGTTCGACC 1481008 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| ||||||| ||||| || ||||| || |||||||| Sbjct 1481009 TCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTTACGAATATTTGCAT 1481055 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || || | || | ||| ||||| ||||||||||| || ||||| || | Sbjct 1480373 CCTCCTCTGAGCCTTAAAACAAGGTGGAGTGTGGATTCTTTTTGGATATTGTAATCTGAT 1480432 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||| | ||||||||| ||| | || | ||| || ||||| || Sbjct 1480433 AATGTACGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAATCTCTGCTGATCTGGAGGG 1480492 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||||| | || || || | | ||| || ||| || ||| Sbjct 1480493 ATACCTTCTTTGTCTTGAATTT-TAGCTTTTACGTTTTCAATTGTATCAGAAGGTTCGAC 1480551 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| |||| || || |||||||| ||||| ||||||||| Sbjct 1480552 TTCCAAGGTGATTGTTTTCCCTGTTAATGTTTTCACAAAGATTTGCATT 1480600 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | | ||| | || | ||| || |||||||||||||||||||| ||||| | Sbjct 1481513 CCTCCTCTCAATCTCAACACAAGGTGGAGGGTTGATTCTTTTTGAATGTTATAGTCAGAA 1481572 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||| | ||||| || || | || | || || ||||| ||| Sbjct 1481573 AGGGTTCGACCATCTTCAAGCTGTTTTCCAGCGAAAATCAACCTCTGCTGATCTGGGGGG 1481632 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| || | | |||||| | | ||| |||||| ||||| | Sbjct 1481633 ATTCCTTCTTTATCTTGGATCTTTGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACT 1481692 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || | |||||||| || || ||||| || || ||||| Sbjct 1481693 TCAAGTGTAATAGTCTTGCCGGTTAAAGTCTTTACGAAGATCTGCAT 1481739 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| ||||||||||| || || | | ||| ||| ||| Sbjct 1481756 AGGACCAAGTGCAGAGTCGATTCCTTTTGAATGTTATAATCCGAGAGAGTTCTACCATCC 1481815 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||| ||||| || | || || |||||||| || || | ||||| || || Sbjct 1481816 TCAAGTTGCTTGCCAGCGAAAATCAGCCTTTGTTGGTCTGGCGGGATACCTTCTTTGTCC 1481875 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| ||| || | ||| || || ||||| ||| | |||||| || Sbjct 1481876 TGGATTTTGGCCTTCACATTCTCAATTGTATCTGAAGGCTCAACTTCCAATGTGATGGTT 1481935 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || |||||||| ||||| ||||| || |||||| || Sbjct 1481936 TTTCCGGTCAAAGTTTTCACAAAGATCTGCATTGTT 1481971 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || |||||||| || |||||||| || | | ||| | ||||||||||| Sbjct 1480169 TGAAGAGTGGATTCTTTCTGGATGTTGTAATCCGAAAGTGTGCGTCCGTCTTCCAATTGC 1480228 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| | || | || || || || || | ||||||||||| ||| | | Sbjct 1480229 TTTCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGGATCCCTTCCTTATCCTGAATCT-T 1480287 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || ||||| | ||| |||||| |||||| ||| | |||||| | || || || Sbjct 1480288 AGCTTTGACATTATCAATGGTGTCAGATGGCTCGACTTCGAGGGTGATTGTCTTTCCTGT 1480347 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 || ||||| ||||| |||||||| Sbjct 1480348 TAAAGTTTTCACAAAGATTTGCAT 1480371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379337518196490