Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01]
1,402 sequences; 650,477,627 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq46 107 1e-18
>seq46
Length=4728336
Score = 107 bits (118), Expect = 1e-18
Identities = 149/206 (72%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181
||||||||| |||||||| |||||||||||||||| | ||| || |||||| | |||
Sbjct 1463679 GTGAAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCGACCATCTTCAAGTTG 1463738
Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241
||| || ||| ||||||| ||||| ||||| || | ||||| ||||| || |
Sbjct 1463739 TTTACCGGCAAAGATAAGCCTTTGCTGATCTGGAGGAATACCTTCTTTATCCTGGATCT- 1463797
Query 18242 TTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300
| || || || | | ||| |||||| || || ||| | || || |||| || |
Sbjct 1463798 TAGCTTTCACATTTTCAATTGTGTCAGATGGTTCTACTTCCAAAGTAATTGTTTTACCAG 1463857
Query 18301 TCAATGTTTTTACAAAAATTTGCATT 18326
| || ||||| ||||| |||||||||
Sbjct 1463858 TTAAGGTTTTAACAAAGATTTGCATT 1463883
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| | || || | || | |||||| || |||||||||||||| |||||||| |
Sbjct 1480829 CCTCCTCTCAGCCTCAAAACGAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCCGAA 1480888
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | ||||||||| ||||| || || |||| | || |||||||| ||
Sbjct 1480889 AGAGTGCGTCCATCTTCCAACTGTTTTCCAGCGAAGATTAACCTCTGTTGATCTGGTGGG 1480948
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| |||||| ||||| ||| | ||| || | | ||| ||||| || |||
Sbjct 1480949 ATGCCTTCTTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTGTCGGATGGTTCGACC 1481008
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| |||||| ||||||| ||||| || ||||| || ||||||||
Sbjct 1481009 TCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTTACGAATATTTGCAT 1481055
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| | || || | || | ||| ||||| ||||||||||| || ||||| || |
Sbjct 1480373 CCTCCTCTGAGCCTTAAAACAAGGTGGAGTGTGGATTCTTTTTGGATATTGTAATCTGAT 1480432
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| || |||||| | ||||||||| ||| | || | ||| || ||||| ||
Sbjct 1480433 AATGTACGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAATCTCTGCTGATCTGGAGGG 1480492
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||| || || ||||| | || || || | | ||| || ||| || |||
Sbjct 1480493 ATACCTTCTTTGTCTTGAATTT-TAGCTTTTACGTTTTCAATTGTATCAGAAGGTTCGAC 1480551
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | |||||| |||| || || |||||||| ||||| |||||||||
Sbjct 1480552 TTCCAAGGTGATTGTTTTCCCTGTTAATGTTTTCACAAAGATTTGCATT 1480600
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| | | ||| | || | ||| || |||||||||||||||||||| ||||| |
Sbjct 1481513 CCTCCTCTCAATCTCAACACAAGGTGGAGGGTTGATTCTTTTTGAATGTTATAGTCAGAA 1481572
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| || |||||| | ||||| || || | || | || || ||||| |||
Sbjct 1481573 AGGGTTCGACCATCTTCAAGCTGTTTTCCAGCGAAAATCAACCTCTGCTGATCTGGGGGG 1481632
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||||| ||||| || | | |||||| | | ||| |||||| ||||| |
Sbjct 1481633 ATTCCTTCTTTATCTTGGATCTTTGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACT 1481692
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| || || | |||||||| || || ||||| || || |||||
Sbjct 1481693 TCAAGTGTAATAGTCTTGCCGGTTAAAGTCTTTACGAAGATCTGCAT 1481739
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || ||||| ||||||||||| || || | | ||| ||| |||
Sbjct 1481756 AGGACCAAGTGCAGAGTCGATTCCTTTTGAATGTTATAATCCGAGAGAGTTCTACCATCC 1481815
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|| | ||| ||||| || | || || |||||||| || || | ||||| || ||
Sbjct 1481816 TCAAGTTGCTTGCCAGCGAAAATCAGCCTTTGTTGGTCTGGCGGGATACCTTCTTTGTCC 1481875
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|||| ||| || | ||| || || ||||| ||| | |||||| ||
Sbjct 1481876 TGGATTTTGGCCTTCACATTCTCAATTGTATCTGAAGGCTCAACTTCCAATGTGATGGTT 1481935
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329
|| |||||||| ||||| ||||| || |||||| ||
Sbjct 1481936 TTTCCGGTCAAAGTTTTCACAAAGATCTGCATTGTT 1481971
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
||||| || |||||||| || |||||||| || | | ||| | |||||||||||
Sbjct 1480169 TGAAGAGTGGATTCTTTCTGGATGTTGTAATCCGAAAGTGTGCGTCCGTCTTCCAATTGC 1480228
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
|| || ||| | || | || || || || || | ||||||||||| ||| | |
Sbjct 1480229 TTTCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGGATCCCTTCCTTATCCTGAATCT-T 1480287
Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301
|| ||||| | ||| |||||| |||||| ||| | |||||| | || || ||
Sbjct 1480288 AGCTTTGACATTATCAATGGTGTCAGATGGCTCGACTTCGAGGGTGATTGTCTTTCCTGT 1480347
Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325
|| ||||| ||||| ||||||||
Sbjct 1480348 TAAAGTTTTCACAAAGATTTGCAT 1480371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379337518196490
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |