Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq157 273 7e-69 >seq157 Length=245904 Score = 273 bits (302), Expect = 7e-69 Identities = 396/549 (72%), Gaps = 10/549 (2%) Strand=Plus/Minus Query 22936 CCCTGGATCGGCGGCAAGCGTCGACTCGCTGACCACATCATCCCGCGCTTTCCGAAGCAC 22995 |||||||| ||||| || || || || || | || || | |||||||||||| ||| Sbjct 174983 CCCTGGATAGGCGGTAAACGGCGGCTGGCAAAACAGATTTTACCGCGCTTTCCGGCGCAT 174924 Query 22996 GACTGTTACGTCGAGGTGTTCGCGGGCGGGGCGGCGCTGTACTTCATGC-GACCGCCAGC 23054 ||| ||||| ||| ||| |||| ||||||||| | ||| ||| | | |||| Sbjct 174923 ACCTGCTACGTGGAGCCGTTTTGTGGCGCGGCGGCGCTCTTCTTTATGAAGTCACCCAGT 174864 Query 23055 CAGGGTCGAGGTGATCAACGATATCAACGGCGAGCTGGTGAACCTGTATCGCGTCGTTCA 23114 ||| |||||||| ||||||||||||||||||||||| || || ||||| || | | Sbjct 174863 AAGGCG-GAGGTGATTAACGATATCAACGGCGAGCTGGTCAATCTCTATCGGGTATTAAA 174805 Query 23115 GCACCATCTCGAAGAGTTCGTGCGTCAGTTCAAATGGGCGCTGACGAGCCGGCAGGTGTT 23174 |||||||| |||||||| |||| ||||| |||||||||||| |||||| | ||| Sbjct 174804 ACACCATCTGGAAGAGTTTATGCGCCAGTTTAAATGGGCGCTGGTCAGCCGGGCGATGTA 174745 Query 23175 CGAGTGGCTGAAGCAT-ACGGTCCCGGAAACCCTCACCGACATCCAGCGTGCGGCACGCT 23233 | ||| | || ||| ||| | || ||| | ||||| |||||||| || || |||| Sbjct 174744 TCAATGG-TTAAACATCACGCCGACCGAGACCTTAACCGATATCCAGCGAGCAGCCCGCT 174686 Query 23234 TCTACTACCTGCAAAAA-AGTTGCTTTGGCGGGAAGCTTGAAGGGCAGACGTTCGGAACG 23292 |||| |||||||||||| || | || ||||| ||| | | | ||| || || || | Sbjct 174685 TCTATTACCTGCAAAAACAGGCG-TTCGGCGGCAAGGTGGCGGAGCACACTTTTGGTTTG 174627 Query 23293 GCGACGACTACGGTGCCGGGCCTGAACCTGCTGCGCATCGAAGAAGAGCTATCGGCGGCG 23352 | || || |||| ||| ||||||||||| | ||||| ||||||||||||||| || Sbjct 174626 ACTACCACCACGGGGCCACGCCTGAACCTGTTACGCATGGAAGAAGAGCTATCGCTCGCT 174567 Query 23353 CACATTCG--TCTCGCGAATGCGTACATCGAGCGGCTCGATTGGGCGACCTGCATCGATC 23410 || | || | || || | | ||| || | || |||||||| | ||| || | | Sbjct 174566 CATCTGCGATTATCACGCA--CCACCATTGAACACCTGGATTGGGCCAGCTGTATTGCCC 174509 Query 23411 GTTACGATCGGCCGCACACGCTGTTCTACCTTGATCCGCCGTACTTCGAGACTGAAGGGT 23470 |||| || || |||||||||||||| ||| || |||||||| | | || ||||| | Sbjct 174508 GTTATGACCGTCCGCACACGCTGTTTTACTGCGACCCGCCGTATTGGGGAACAGAAGGCT 174449 Query 23471 ACGGCGTCG 23479 | ||||||| Sbjct 174448 ATGGCGTCG 174440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170669158524540