Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq13 111 2e-19 seq105 104 3e-17 >seq13 Length=9188118 Score = 111 bits (122), Expect = 2e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 ||||||||||| | ||| ||||||||| ||||| || ||||| || || |||||||| Sbjct 3474722 TAAGTATCGATTAGAAGTGAATACATTTCGGAATGGATATTTTCTATTGCGATCTGAAAA 3474781 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971 ||||||||||| || || || || | || |||||| | |||| ||||| | | |||| Sbjct 3474782 CCGTAGAAACACCTCGCTTCAGTCACTTGGACTTCTTGAGAAAACCGTTCGACAAGATTT 3474841 Query 33972 TCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATG 34015 ||||| || || || || || || ||||| || || ||||| Sbjct 3474842 TCATTTACAATCCCGTCCGATGCAGCGAAAAATGCTAAAACATG 3474885 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 34121 ||| | || || | ||| |||||||| ||||||||||| ||||| || |||||||| ||| Sbjct 3474988 ATAACCTTTGAAAGATCGACTTCTTCTACTGTCCAAAACGATGCTTCGGCCTTTTTGTAC 3475047 Query 34122 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 34165 || |||| ||||| || || | ||| || || || ||||| || Sbjct 3475048 ATTCTCCATATGTCGTGGTACTCGATCGGAAACATGACAAACCT 3475091 >seq105 Length=1502237 Score = 104 bits (114), Expect = 3e-17 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| || ||||||||||| | ||||| | |||||||| ||| |||| |||||||| | Sbjct 287927 TACCTGAAATTCTCCAGATAGCACTCTTCTTGTGTAAATGTTAGTGGTGTACGGTTCAAA 287868 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || |||||||| || | ||| ||||| || ||||| || ||||| || || | ||| | Sbjct 287867 AGATTCATTATTGCCGAGAATCTGAGCTGTAGATGCTGTAGGCATTGGAGCGATCAAAAG 287808 Query 62507 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 ||| |||| ||| ||| | || ||||| ||||| ||| | ||| | ||| ||| Sbjct 287807 GGAATTCCTAACACC--ATGCTTTGCTATTTTCTCTTTGAGAGCATTCCAGTCCCATAGA 287750 Query 62565 TCCGACGG 62572 || || || Sbjct 287749 TCAGATGG 287742 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||| | || ||||| | || || || || || || || || |||||||||||||||| Sbjct 284751 GTTGCAGCGTTAAAAAGTGTGGGGGAGGCATGTGTGAAATATCCTTCAGAAAGTAGATTG 284692 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || ||||| || | ||| || || | ||||||||| | ||||| | ||| ||| Sbjct 284691 TAAGTTTCAATTGCAGCGTCAATGTCTTCTCCATGAATTCCAATCGCGACTCTCATCAAC 284632 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTT 63811 || ||||||||||| || ||||||||||| Sbjct 284631 ATATGCTGAGGTCTCTCGACAATTTTGTT 284603 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || || || |||||||| | |||| ||| || |||||| ||||||| |||||||| | | Sbjct 285099 TTATTGCCACCCTGATCCACATATCGAGCAGTATTATTAAAAACTCTTAACATTGGCACA 285040 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTAC-T 63535 | ||||| || || ||||| || || | || | | || | || |||||| | | Sbjct 285039 AGTCCGTTAGAGATGCCATTTGTTCCAGCAATTAAACTGCCTTTTGCCCGAATACAATGT 284980 Query 63536 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595 | ||| | || || || || || |||| || || || || | ||||||| || || Sbjct 284979 ACGTGA-ATTCCAATACCACCAGCAGTTTTTGAAATCAACGCAGACTGTTTTAATGTATC 284921 Query 63596 ATAGATGCCTTCTATGCTATCATC 63619 | |||| ||||| ||||||||||| Sbjct 284920 AAAGATACCTTCGATGCTATCATC 284897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629806562446560