Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq105 118 1e-21 seq13 102 1e-16 >seq105 Length=1502237 Score = 118 bits (130), Expect = 1e-21 Identities = 140/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| |||||||||||||| | ||||| | |||||||| ||| |||| |||||||| | Sbjct 287927 TACCTGAAATTCTCCAGATAGCACTCTTCTTGTGTAAATGTTAGTGGTGTACGGTTCAAA 287868 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 ||| |||||||| || | ||| ||||| || ||||| || ||||| || || | ||| | Sbjct 287867 AGATTCATTATTGCCGAGAATCTGAGCTGTAGATGCTGTAGGCATTGGAGCGATCAAAAG 287808 Query 65300 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 65357 ||| |||| ||| ||| | || ||||| ||||| |||| | ||| | ||| ||| Sbjct 287807 GGAATTCCTAACACC--ATGCTTTGCTATTTTCTCTTTGAGAGCATTCCAGTCCCATAGA 287750 Query 65358 TCCGACGG 65365 || || || Sbjct 287749 TCAGATGG 287742 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||| | || ||||| | || || || || || || || || |||||||||||||||| Sbjct 284751 GTTGCAGCGTTAAAAAGTGTGGGGGAGGCATGTGTGAAATATCCTTCAGAAAGTAGATTG 284692 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || ||||| || | ||| || || | ||||||||| | ||||| | ||| ||| Sbjct 284691 TAAGTTTCAATTGCAGCGTCAATGTCTTCTCCATGAATTCCAATCGCGACTCTCATCAAC 284632 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTT 66604 || ||||||||||| || || || ||||| Sbjct 284631 ATATGCTGAGGTCTCTCGACAATTTTGTT 284603 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 ||||||| ||||| ||||| |||||||| || |||||||| || || | || || | Sbjct 286253 CATATGTCTCGTACGGTCCAAGTTTCTCAGCAAGATCACAACTTGCTTCAAGCGCGCCAT 286194 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||| || ||||| |||| || || | ||| || | | ||| || || || | Sbjct 286193 AATAAATTGTCTCGAATATCTGTTTGTTCAATGTTTGGGCCTGAATGCTCTCGAACGGGT 286134 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | | || || | || ||||| |||||||||||||| || ||||| | ||| | Sbjct 286133 ACCTCATCAATATGAAAGTATCGGCTAAACCTTGAACACCAATTCCAATAGGACGATGCC 286074 Query 65599 TCTTATTAGA 65608 || | || || Sbjct 286073 TCATGTTCGA 286064 >seq13 Length=9188118 Score = 102 bits (112), Expect = 1e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 || ||||| || | ||| ||||||||| ||||| || ||||| || || || ||||| Sbjct 3474722 TAAGTATCGATTAGAAGTGAATACATTTCGGAATGGATATTTTCTATTGCGATCTGAAAA 3474781 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 36547 ||||||||||| || || || || | || |||||| | |||| ||||| | | |||| Sbjct 3474782 CCGTAGAAACACCTCGCTTCAGTCACTTGGACTTCTTGAGAAAACCGTTCGACAAGATTT 3474841 Query 36548 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 36591 ||||| || || ||||| || || ||||| || || ||||| Sbjct 3474842 TCATTTACAATCCCGTCCGATGCAGCGAAAAATGCTAAAACATG 3474885 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 36635 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 36694 || ||| | || || | ||| |||||||| ||||||||||| ||||| || |||||||| Sbjct 3474985 TTAATAACCTTTGAAAGATCGACTTCTTCTACTGTCCAAAACGATGCTTCGGCCTTTTTG 3475044 Query 36695 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 ||||| |||| ||||| || || | || ||||| || ||||| || Sbjct 3475045 TACATTCTCCATATGTCGTGGTACTCGATCGGAAACATGACAAACCT 3475091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658161265521680