Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq46 114 1e-20 >seq46 Length=4728336 Score = 114 bits (126), Expect = 1e-20 Identities = 160/219 (73%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 |||||| | ||||| || || ||||||||||| || || || | |||| || | | Sbjct 1480843 CAAAACGAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCCGAAAGAGTGCGTCCA-T 1480901 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| | |||||| ||||| |||| | | || ||||| || || ||||||||||| | Sbjct 1480902 CTTCCAACTGTTTTCCAGCGAAGATTAACCTCTGTTGATCTGGTGGGATGCCTTCTTTAT 1480961 Query 139671 CGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | ||| | || | ||| | | ||| | |||||||| || || ||||||| || | Sbjct 1480962 CC-TGAATCTTGGCCTTAACATTTTCAATTGTGTCGGATGGTTCGACCTCAAGAGTGATG 1481020 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || ||||| ||||| || |||||||||||||||||| || Sbjct 1481021 GTTTTGCCTGTCAAAGTCTTTACGAATATTTGCATACCT 1481059 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| || | ||| || | ||| | || || ||||||||||||||||| || Sbjct 1481512 GCCTCCTCTCAATCTCAACACAAGGTGGAGGGTTGATTCTTTTTGAATGTTATAGTCAGA 1481571 Query 139597 CATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || |||| ||||| |||||||| ||||| | |||| | |||||||| || Sbjct 1481572 AAGGGT--TCGACCATCTTCAAGCTGTTTTCCAGCGAAAATCAACCTCTGCTGATCTGGG 1481629 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || |||||||| || ||| ||| || | | ||| | ||||||| ||||| Sbjct 1481630 GGGATTCCTTCTTTATCTTGGATCTTTGCCTTGACATTTTCAATAGTGTCGGAAGGCTCT 1481689 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||| || | ||||||||||| || || |||||||| || ||||| Sbjct 1481690 ACTTCAAGTGTAATAGTCTTGCCGGTTAAAGTCTTTACGAAGATCTGCAT 1481739 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG--T 139610 ||||| | ||| | || || |||||||| || || ||||| | || || ||| | Sbjct 1480388 AAAACAAGGTGGAGTGTGGATTCTTTTTGGATATTGTAATC--TGATAATGTACGACCAT 1480445 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| || ||||| || ||| | |||| | |||||||| ||||| || |||||||||| Sbjct 1480446 CTTCAAGTTGTTTGCCGGCAAAAATCAATCTCTGCTGATCTGGAGGGATACCTTCTTTGT 1480505 Query 139671 CGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | ||| |||| | ||||| | ||| | ||| || | || || || || | ||| | Sbjct 1480506 C-TTGAATTTTAGCTTTTACGTTTTCAATTGTATCAGAAGGTTCGACTTCCAAGGTGATT 1480564 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || || ||||| || || |||||||| Sbjct 1480565 GTTTTCCCTGTTAATGTTTTCACAAAGATTTGCAT 1480599 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| || || | || || || ||||||||||||||||| | || | | || || Sbjct 1481074 AACCAAATGCAAAGTCGATTCCTTTTGAATGTTATAATCTGAGAGCGTACGCCCATCCTC 1481133 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||| ||||| || ||| | ||||| | ||||| || || || |||||||||||||| Sbjct 1481134 GAGTTGTTTTCCGGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTG 1481193 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||||| ||| | | ||| | ||||| | ||||| || || | || | ||||| Sbjct 1481194 TATTTTAGCTTTGACATTTTCAATAGTGTCTGATGGCTCGACTTCTAAAGTTATGGTCTT 1481253 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| || || |||||||| Sbjct 1481254 TCCGGTTAGAGTTTTAACAAAAATTTGCAT 1481283 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || ||||| || ||||||||||| | |||| | ||||| | ||| Sbjct 1480625 TGAAGAGTGGATTCTTTCTGGATGTTATAATCAGAAAGAGTGCGCCCATCTTCTAACTGC 1480684 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| ||| |||| || | ||||| || || || || |||||||| || ||| |||| Sbjct 1480685 TTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCTTCTTTATC-CTGAATTTT 1480743 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||| | | ||| | || || | || || || |||| || | |||||| || || Sbjct 1480744 CGCTTTGACATTTTCAATCGTATCCGATGGTTCGACTTCAAGAGTGATCGTCTTTCCTGT 1480803 Query 139741 CAACGTTTTTACGAATATTTGCATAGCT 139768 || ||||| || || ||||||||| || Sbjct 1480804 TAAAGTTTTCACAAAGATTTGCATACCT 1480831 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| || | ||| || | || | ||||| ||||| ||||||||||||||| Sbjct 1481285 CCTCCTCGCAATCTCAATACAAGATGGAGGGTAGATTCTTTCTGAATGTTATAATCGGAA 1481344 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | |||||| || || || || ||| | |||| | |||||||| ||||| Sbjct 1481345 AGTGTTCGGCCGTCTTCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGA 1481404 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || ||||| || ||| | || | |||| | | ||| | ||| || | ||||| || Sbjct 1481405 ATACCCTCTTTATC-TTGAATCTTAGCTTTAACATTTTCAATTGTATCAGAAGGCTCGAC 1481463 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | || || ||||| || ||||| Sbjct 1481464 TTCCAAAGTGATGGTCTTTCCTGTAAGAGTCTTCACGAAGATCTGCAT 1481511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496055306478400