Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq105 122 1e-22 seq13 116 5e-21 >seq105 Length=1502237 Score = 122 bits (134), Expect = 1e-22 Identities = 141/188 (75%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| |||||||||||||| | ||||| | |||||||| ||| |||| || ||||| | Sbjct 287927 TACCTGAAATTCTCCAGATAGCACTCTTCTTGTGTAAATGTTAGTGGTGTACGGTTCAAA 287868 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 ||||||||||| || | ||| ||||| || ||||| || ||||| || || | ||| | Sbjct 287867 AGATTCATTATTGCCGAGAATCTGAGCTGTAGATGCTGTAGGCATTGGAGCGATCAAAAG 287808 Query 79179 ACTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGA 79236 ||| |||| ||| ||| | || ||||| ||||| |||| | ||| ||||| ||| Sbjct 287807 GGAATTCCTAACACC--ATGCTTTGCTATTTTCTCTTTGAGAGCATTCCAGTCCCATAGA 287750 Query 79237 TCAGACGG 79244 ||||| || Sbjct 287749 TCAGATGG 287742 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||| | || ||||| | || || || || || || || || |||||| ||||||||| Sbjct 284751 GTTGCAGCGTTAAAAAGTGTGGGGGAGGCATGTGTGAAATATCCTTCAGAAAGTAGATTG 284692 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || ||||| || | || || || | ||||||||| | |||||| | ||| ||| Sbjct 284691 TAAGTTTCAATTGCAGCGTCAATGTCTTCTCCATGAATTCCAATCGCGACTCTCATCAAC 284632 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTT 80483 || ||||||||||| || || || ||||| Sbjct 284631 ATATGCTGAGGTCTCTCGACAATTTTGTT 284603 Score = 86.0 bits (94), Expect = 9e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || || || |||||||| | |||| ||| || |||||| ||||||| |||||||| | | Sbjct 285099 TTATTGCCACCCTGATCCACATATCGAGCAGTATTATTAAAAACTCTTAACATTGGCACA 285040 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTAC-T 80207 | || || || | ||||| || || | || | || || | || |||||| | | Sbjct 285039 AGTCCGTTAGAGATGCCATTTGTTCCAGCAATTAAACTGCCTTTTGCCCGAATACAATGT 284980 Query 80208 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267 | ||| | || || || || || |||| || || || || | ||||||| ||||| Sbjct 284979 ACGTGA-ATTCCAATACCACCAGCAGTTTTTGAAATCAACGCAGACTGTTTTAATGTATC 284921 Query 80268 ATAGATGCCCTCTATGCTATCATC 80291 | |||| || || ||||||||||| Sbjct 284920 AAAGATACCTTCGATGCTATCATC 284897 >seq13 Length=9188118 Score = 116 bits (128), Expect = 5e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 ||||||||||| | ||| ||||||||| ||||| || ||||| || || |||||||| Sbjct 3474722 TAAGTATCGATTAGAAGTGAATACATTTCGGAATGGATATTTTCTATTGCGATCTGAAAA 3474781 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTT 50349 ||||||||||| || || || || | || |||||| | |||| ||||| | | |||| Sbjct 3474782 CCGTAGAAACACCTCGCTTCAGTCACTTGGACTTCTTGAGAAAACCGTTCGACAAGATTT 3474841 Query 50350 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 50393 ||||| || || ||||| || || ||||| || || ||||| Sbjct 3474842 TCATTTACAATCCCGTCCGATGCAGCGAAAAATGCTAAAACATG 3474885 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 50437 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 50496 || ||| | || || | ||| |||||||| ||||||||||| ||||| || |||||||| Sbjct 3474985 TTAATAACCTTTGAAAGATCGACTTCTTCTACTGTCCAAAACGATGCTTCGGCCTTTTTG 3475044 Query 50497 TACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 ||||| |||| ||||| || || | ||| || || || ||||| || Sbjct 3475045 TACATTCTCCATATGTCGTGGTACTCGATCGGAAACATGACAAACCT 3475091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718256212339280