Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq13 107 2e-18 >seq13 Length=9188118 Score = 107 bits (118), Expect = 2e-18 Identities = 158/222 (71%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 |||||||||| ||| | |||||| ||||| || | || || | | || ||||| Sbjct 3474382 CCTCATCTCTGGAAATCAATTCGTTGCTGAAA--GTCAGCCCAGGTAGAAGGCCACGTTT 3474439 Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 ||| | ||| ||||| || ||||| ||||| || || |||||||| || || ||||| Sbjct 3474440 TTTCATCCAGAATATCGCGGCGAAACTGCCGGAGAAAAAGATTCCCTCGACGGCGGCAAA 3474499 Query 13800 CGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 || | | ||| || || || | ||||| | | |||| |||||| |||||||| Sbjct 3474500 AGCCACGACTCGCTCGCCGAAGGTCGCTTTATCGCTTGAGATCCATGACAATGCCCATTC 3474559 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 | || || |||| | | ||||| ||||||||||||||||| Sbjct 3474560 TGCCTTCTTCTTAACACACTCCATGGTTTCGATTGCATTGAA 3474601 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| ||||| || || | ||||||||| || || || |||||||| || |||||| Sbjct 3474719 ATGTAAGTATCGATTAGAAGTGAATACATTTCGGAATGGATATTTTCTATTGCGATCTGA 3474778 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAA 14048 ||||| || ||||| || ||||| | | ||| || || ||| |||| | ||| | ||| Sbjct 3474779 AAACCGTAGAAACACCTCGCTTCAGTCACTTGGACTTCTTGAG-AAAACCGTTC-GACAA 3474836 Query 14049 G-TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAA 14090 | |||||||| ||||| || || || || |||||||| || Sbjct 3474837 GATTTTCATTTACAATCCCGTCCGATGCAGCGAAAAATGCTAA 3474879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478580412731280