Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq105 123 3e-23 seq13 111 2e-19 >seq105 Length=1502237 Score = 123 bits (136), Expect = 3e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| |||||||||||||| | ||||| | |||||||| ||| |||| |||||||| | Sbjct 287927 TACCTGAAATTCTCCAGATAGCACTCTTCTTGTGTAAATGTTAGTGGTGTACGGTTCAAA 287868 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 || |||||||| || | ||| ||||| || ||||| || ||||| || || | ||| || Sbjct 287867 AGATTCATTATTGCCGAGAATCTGAGCTGTAGATGCTGTAGGCATTGGAGCGATCAAAAG 287808 Query 71262 ACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321 ||| |||| |||||| | ||||| ||||| |||| | ||| | ||| ||||| Sbjct 287807 GGAATTCCTAACACCATGCTTTGCTATTTTCTCTTTGAGAGCATTCCAGTCCCATAGATC 287748 Query 71322 CGATGG 71327 ||||| Sbjct 287747 AGATGG 287742 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||| | || ||||| | || || || || || || || || |||||| ||||||||| Sbjct 284751 GTTGCAGCGTTAAAAAGTGTGGGGGAGGCATGTGTGAAATATCCTTCAGAAAGTAGATTG 284692 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || ||||| || | || || || | ||| ||||| | |||||| | ||| ||| Sbjct 284691 TAAGTTTCAATTGCAGCGTCAATGTCTTCTCCATGAATTCCAATCGCGACTCTCATCAAC 284632 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTT 72566 |||||||||||||| || || || ||||| Sbjct 284631 ATATGCTGAGGTCTCTCGACAATTTTGTT 284603 >seq13 Length=9188118 Score = 111 bits (122), Expect = 2e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || |||||||| | ||| ||||||||| ||||| || ||||| || || |||||||| Sbjct 3474722 TAAGTATCGATTAGAAGTGAATACATTTCGGAATGGATATTTTCTATTGCGATCTGAAAA 3474781 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454 ||||||||||| || || || || || || |||||| | |||| ||||| | | |||| Sbjct 3474782 CCGTAGAAACACCTCGCTTCAGTCACTTGGACTTCTTGAGAAAACCGTTCGACAAGATTT 3474841 Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 42498 || || || || ||||| || || ||||| || || ||||| Sbjct 3474842 TCATTTACAATCCCGTCCGATGCAGCGAAAAATGCTAAAACATG 3474885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671127438285520