Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq46 113 5e-20 >seq46 Length=4728336 Score = 113 bits (124), Expect = 5e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG--TCTTCGAGTT 143039 |||| ||| |||||||| || |||||||| ||| | || |||| ||||| |||| Sbjct 1463680 TGAAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGAGT--TCGACCATCTTCAAGTT 1463737 Query 143040 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTT 143099 ||||||| ||| |||| || | ||||||||| ||||| || |||||||| || || | Sbjct 1463738 GTTTACCGGCAAAGATAAGCCTTTGCTGATCTGGAGGAATACCTTCTTTATCCTGGATCT 1463797 Query 143100 TTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGG 143159 | ||| | | ||| | ||||| | ||||||||||| | ||| | || || || | Sbjct 1463798 TAGCTTTCACATTTTCAATTGTGTCAGATGGTTCTACTTCCAAAGTAATTGTTTTACCAG 1463857 Query 143160 TCAATGTTTTTACGAATATTTGCAT 143184 | || ||||| || || |||||||| Sbjct 1463858 TTAAGGTTTTAACAAAGATTTGCAT 1463882 Score = 111 bits (122), Expect = 2e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG--T 143030 ||||| | || | ||| ||||||||||| || |||||||| | || || ||| | Sbjct 1480388 AAAACAAGGTGGAGTGTGGATTCTTTTTGGATATTGTAATC--TGATAATGTACGACCAT 1480445 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| |||||||| || ||| | |||| | |||||||| ||||| || |||||||||| Sbjct 1480446 CTTCAAGTTGTTTGCCGGCAAAAATCAATCTCTGCTGATCTGGAGGGATACCTTCTTTGT 1480505 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | |||||| ||||| | ||| | || || | ||||| ||||| | || | | Sbjct 1480506 CTTGAATTTTAGCTTTTACGTTTTCAATTGTATCAGAAGGTTCGACTTCCAAGGTGATTG 1480565 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || |||||||| || || |||||||| Sbjct 1480566 TTTTCCCTGTTAATGTTTTCACAAAGATTTGCAT 1480599 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | | |||||| | |||| || ||||||||||| || ||||| || Sbjct 1480829 CCTCCTCTCAGCCTCAAAACGAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCCGAA 1480888 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | ||||| | ||||| ||||| |||| | | || ||||| || || Sbjct 1480889 AGAGTGCGTCCA-TCTTCCAACTGTTTTCCAGCGAAGATTAACCTCTGTTGATCTGGTGG 1480947 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||||||||| || ||| || || | | ||| | ||||| | ||||| || Sbjct 1480948 GATGCCTTCTTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTGTCGGATGGTTCGAC 1481007 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | || ||||| ||||| || |||||||||||||||||| || Sbjct 1481008 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTTACGAATATTTGCATACCT 1481059 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 ||||||||||| | | || || | || | ||||||||||| || || ||||||||| Sbjct 1479914 TGGCCTCCTCGGAGTCTCAGTACGAGGTGGAGAGTAGATTCTTTCTGAATATTGTAATCG 1479973 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | ||| | ||||| ||||| || || ||| |||| || | ||||||||| || Sbjct 1479974 GAGAGTGTACGACCATCTTCCAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGATCTGGG 1480033 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || |||||||| || ||||| ||||| | ||| | || || | || || Sbjct 1480034 GGAATTCCTTCTTTATCTTGGATTTTGGCTTTTACGTTTTCAATGGTATCTGATGGCTCG 1480093 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| | ||| | || ||||| ||||| || || ||||| || ||||| Sbjct 1480094 ACTTCGAGAGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 1480143 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | | ||| ||||| | || ||||| ||||| ||||| ||||| Sbjct 1481057 CCTCCTCTCAACCTGAGAACCAAATGCAAAGTCGATTCCTTTTGAATGTTATAATCTGAG 1481116 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | || ||||||||||| || ||| | ||||| | ||||| || || || Sbjct 1481117 AGCGTACGCCCATCCTCGAGTTGTTTTCCGGCAAAAATCAGCCTCTGCTGGTCTGGGGGA 1481176 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||||| ||| | | ||| | ||||| | || || ||| Sbjct 1481177 ATGCCTTCTTTGTCTTGTATTTTAGCTTTGACATTTTCAATAGTGTCTGATGGCTCGACT 1481236 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| ||||| | ||||| || || |||||||| Sbjct 1481237 TCTAAAGTTATGGTCTTTCCGGTTAGAGTTTTAACAAAAATTTGCAT 1481283 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| || | ||| || | ||| | ||||||||||| || ||||| |||||| Sbjct 1481285 CCTCCTCGCAATCTCAATACAAGATGGAGGGTAGATTCTTTCTGAATGTTATAATCGGAA 1481344 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | |||||| ||||| || || ||| | |||| | |||||||| ||||| Sbjct 1481345 AGTGTTCGGCCGTCTTCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGA 1481404 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || ||||| || ||| || ||| | | ||| | || || | || || ||| Sbjct 1481405 ATACCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATTGTATCAGAAGGCTCGACT 1481464 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || || | || || ||||| || ||||| Sbjct 1481465 TCCAAAGTGATGGTCTTTCCTGTAAGAGTCTTCACGAAGATCTGCAT 1481511 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| || | ||| || | || | || ||||||||||| ||||| || || Sbjct 1481512 GCCTCCTCTCAATCTCAACACAAGGTGGAGGGTTGATTCTTTTTGAATGTTATAGTCAGA 1481571 Query 143017 CATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | || |||| ||||| || ||||| ||||| | |||| | |||||||| || Sbjct 1481572 AAGGGT--TCGACCATCTTCAAGCTGTTTTCCAGCGAAAATCAACCTCTGCTGATCTGGG 1481629 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || |||||||| || || ||| || | | ||| | ||||| | || ||| Sbjct 1481630 GGGATTCCTTCTTTATCTTGGATCTTTGCCTTGACATTTTCAATAGTGTCGGAAGGCTCT 1481689 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| || | ||||||||||| || || |||||||| || ||||| Sbjct 1481690 ACTTCAAGTGTAATAGTCTTGCCGGTTAAAGTCTTTACGAAGATCTGCAT 1481739 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||||| || |||||||| || ||||||||||| | ||||| ||| Sbjct 1480159 CAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCCGAAAGTGTGCGTCCGTC 1480218 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||| || |||||| | || | | ||||| || ||||| || ||||| || || Sbjct 1480219 TTCCAATTGCTTTCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGGATCCCTTCCTTATC 1480278 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||| || ||| | | || | ||||| | || || ||||| | || | || Sbjct 1480279 CTGAATCTTAGCTTTGACATTATCAATGGTGTCAGATGGCTCGACTTCGAGGGTGATTGT 1480338 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||| || || || ||||| || || ||||||||| || Sbjct 1480339 CTTTCCTGTTAAAGTTTTCACAAAGATTTGCATACCT 1480375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507005514572640