Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_004616.1 Length=44970 Score E Sequences producing significant alignments: (Bits) Value seq89 96.9 1e-15 >seq89 Length=3091062 Score = 96.9 bits (106), Expect = 1e-15 Identities = 125/169 (74%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 29 AAGCGTTTTATAAAGCTTGTAAAAAATA---TAAGGGCaaaaaaaGGGCAGATTTAAGCT 85 ||| |||||||| | |||| ||||| ||||| || ||||||||||||| | | Sbjct 2303995 AAGGGTTTTATA--GGTTGTTCAAAATTAACTAAGGTCAGAAAAAGGGCAGATAGAT--T 2303940 Query 86 AACTTGGAATGTTTTCGAGTTTTTGAGTTAGTTCTCTATCCATTTTTTCAGTTACATGAG 145 |||||||||| ||||| | ||| | |||| | | | |||| |||||| |||| ||| | Sbjct 2303939 AACTTGGAATATTTTCAAATTTCTAGGTTAACTGTTTGTCCA-TTTTTCTGTTAAATGCG 2303881 Query 146 TATATATGCGAATGGTTGTTTTTTCATCTACATGTCCTACCCTTTTCAT 194 | ||||| |||| || |||||||| || ||| || || |||||||| Sbjct 2303880 TGTATATTTGAATAGTAGTTTTTTCGTCAGTATGACCAACTCTTTTCAT 2303832 Score = 91.5 bits (100), Expect = 4e-14 Identities = 157/220 (71%), Gaps = 11/220 (5%) Strand=Plus/Minus Query 1152 TTCTTTTTGTGATTGTTTTGTATTCTTGTTCAACACAACACTTACGC-GCTTCCATTTAT 1210 |||||| || || ||| |||| ||||||| ||||||| ||| | || || |||||| Sbjct 2303273 TTCTTTCTGAGAAATTTTAGTATCTTTGTTCATTACAACACATACTCTGCGTC-ATTTAT 2303215 Query 1211 CTGTGTATGGATCTTTATACTTCTCGTAGTATCTGTATTTAGTTTCGTTAtttttgtttt 1270 | |||||| ||||||||||||| || | | ||||||||||| | ||| | || Sbjct 2303214 CCGTGTATAAGTCTTTATACTTCTTATATAAGCGGTATTTAGTTTTGCCTGCTTTATCTT 2303155 Query 1271 taaatttttCAATCCACAT-GTTTATACCTCCTGA----GAGAACGTACGTTC--TGTAA 1323 |||||| ||| |||||| | ||| |||||| | |||||||| |||| | ||| Sbjct 2303154 TAAATTGTTCTGACCACATAATGTATTCCTCCTTACATTTAGAACGTAAGTTCAATATAA 2303095 Query 1324 ATTTGTAAAAAATAATAAGGGTAGGTGG-GCTACCCAAAA 1362 | | || ||||||| |||| || || || ||||||| Sbjct 2303094 AGAT-TAGAAAATAAATAGGGCAGTAGGAACTGCCCAAAA 2303056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143780006202768