Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq46 102 5e-17 >seq46 Length=4728336 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 |||||||| | || ||| || | ||| | || || ||||| || || |||||||| || Sbjct 1480145 CCGCCTCTGAGCCTCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCCGAA 1480204 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || || ||| ||||||||||||||| ||| ||||| | |||||||| | || Sbjct 1480205 AGTGTGCGTCCGTCTTCCAATTGCTTTCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGG 1480264 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTC-GTTGGGTTGAAC 33321 || ||||| || || |||| ||| || | | ||| ||||| | ||| | | || Sbjct 1480265 ATCCCTTCCTTATCCTGAATCTTAGCTTTGACATTATCAATGGTGTCAGATGGCTCG-AC 1480323 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| || | |||||| || || |||||||| Sbjct 1480324 TTCGAGGGTGATTGTCTTTCCTGTTAAAGTTTTCACAAAGATTTGCAT 1480371 Score = 102 bits (112), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || ||| || | || | || || |||||||| |||||||| || || Sbjct 1480828 ACCTCCTCTCAGCCTCAAAACGAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCCGA 1480887 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || || || ||||| || |||||| || ||||| | || || || | || Sbjct 1480888 AAGAGTGCGTCCATCTTCCAACTGTTTTCCAGCGAAGATTAACCTCTGTTGATCTGGTGG 1480947 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||||||| || |||| ||| || || ||| ||| |||||| |||| Sbjct 1480948 GATGCCTTCTTTATCCTGAATCTTGGCC---TTAACATTTTCAATTGTGTCGGATGGTTC 1481004 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || ||||| || || | ||| |||||||| |||||||| Sbjct 1481005 GACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTTACGAATATTTGCAT 1481055 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| |||| | ||||||||||| ||||| || ||||| || || ||||| || Sbjct 1481056 ACCTCCTCTCAACCTGAGAACCAAATGCAAAGTCGATTCCTTTTGAATGTTATAATCTGA 1481115 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | || || | ||| ||||| ||| || | | |||||||| | ||| Sbjct 1481116 GAGCGTACGCCCATCCTCGAGTTGTTTTCCGGCAAAAATCAGCCTCTGCTGGTCTGGGGG 1481175 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTC-GTTGGGTTGAA 33320 ||||||||||| || || ||| || ||| ||| ||||| | ||| | || Sbjct 1481176 AATGCCTTCTTTGTCTTGTATTTTAGCTTTGACATTTTCAATAGTGTCTGATGGCTCGA- 1481234 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || | |||||| || ||||| || |||||||| || ||||||||||| Sbjct 1481235 CTTCTAAAGTTATGGTCTTTCCGGTTAGAGTTTTAACAAAAATTTGCAT 1481283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318772153086996