Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq46 123 2e-23 >seq46 Length=4728336 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||| || | |||||||| | || || |||||||| |||||||| Sbjct 1481056 ACCTCCTCTCAACCTGAGAACCAAATGCAAAGTCGATTCCTTTTGAATGTTATAATCTGA 1481115 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | |||| |||| || | ||||||||| ||||| |||| || |||||||| | || Sbjct 1481116 GAGCGTACGCCCATCCTCGAGTTGTTTTCCGGCAAAAATCAGCCTCTGCTGGTCTGGGGG 1481175 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||||| |||||| | ||| ||| |||| ||||| || Sbjct 1481176 AATGCCTTCTTTGTCTTGTATTTTAGCTTTGACATTTTCAATAGTGTCTGATGGCTCGAC 1481235 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || ||||||| ||| || ||||| |||||||| Sbjct 1481236 TTCTAAAGTTATGGTCTTTCCGGTTAGAGTTTTAACAAAAATTTGCAT 1481283 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| |||||| || || | ||| || || ||||| ||||| ||||||||| Sbjct 1481285 CCTCCTCGCAATCTCAATACAAGATGGAGGGTAGATTCTTTCTGAATGTTATAATCGGAA 1481344 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | || | || || | ||| ||||||||||| ||||||| ||||| || |||| Sbjct 1481345 AGTGTTCGGCCGTCTTCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGA 1481404 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| ||||||||| ||| || ||| || | ||| ||||| | ||||| || Sbjct 1481405 ATACCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATTGTATCAGAAGGCTCGACT 1481464 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || || || | ||||||||| || || |||||| Sbjct 1481465 TCCAAAGTGATGGTCTTTCCTGTAAGAGTCTTCACGAAGATCTGCATG 1481512 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||||||| ||||| | || || || ||||||||||| ||||| || Sbjct 1481513 CCTCCTCTCAATCTCAACACAAGGTGGAGGGTTGATTCTTTTTGAATGTTATAGTCAGAA 1481572 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | || |||| || | |||||||| || || ||||||| ||||| || | || Sbjct 1481573 AGGGTTCGACCATCTTCAAGCTGTTTTCCAGCGAAAATCAACCTCTGCTGATCTGGGGGG 1481632 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| || ||| ||||| | ||| ||| || | ||||| || Sbjct 1481633 ATTCCTTCTTTATCTTGGATCTTTGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACT 1481692 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || |||||||||||||| || || || ||||| Sbjct 1481693 TCAAGTGTAATAGTCTTGCCGGTTAAAGTCTTTACGAAGATCTGCAT 1481739 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| |||||||| |||||| | | ||| |||| |||| ||| || || ||||| Sbjct 1479953 TCTTTCTGAATATTGTAATCGGAGAGTGTACGACCATCTTCCAGTTGCTTGCCGGCAAAG 1480012 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || | || |||||| || | || | |||||||||||| ||||| ||| || | Sbjct 1480013 ATGAGCCTTTGCTGATCTGGGGGAATTCCTTCTTTATCTTGGATTTTGGCTTTTACGTTT 1480072 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||||| ||||| || |||| || || ||||| || || |||||||| || Sbjct 1480073 TCAATGGTATCTGATGGCTCGACTTCGAGAGTGATGGTTTTGCCAGTCAAAGTCTTGACG 1480132 Query 44111 AATATTTGCATGTCG 44125 || || |||||| || Sbjct 1480133 AAGATCTGCATGCCG 1480147 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTC 43965 |||| || | ||| || ||| ||||| || || |||||||| | | || ||| | Sbjct 1480613 CTTAGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTATAATCAGAAAGAGTG-CGCCC 1480671 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 ||| || || || || || ||||| || | || |||||||| | || | ||||||||| Sbjct 1480672 ATCTTCTAACTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCTTCTTT 1480731 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 ||| |||||| |||||| | ||| ||||| | || || || || | || || Sbjct 1480732 ATCCTGAATTTTCGCTTTGACATTTTCAATCGTATCCGATGGTTCGACTTCAAGAGTGAT 1480791 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || |||||||| |||||||| |||||||| Sbjct 1480792 CGTCTTTCCTGTTAAAGTTTTCACAAAGATTTGCAT 1480827 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || | ||| ||||||||||| ||||||| ||||| || |||| | ||| |||||| Sbjct 1463500 TCTTCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGAATACCCTCTTTA 1463559 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 ||| ||| || ||| || | ||| || || | || || || || | || ||| Sbjct 1463560 TCTTGAATCTTAGCTTTAACATTTTCAATTGTGTCAGATGGTTCTACTTCCAAGGTGATT 1463619 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| ||||| || || ||||| |||||||| Sbjct 1463620 GTTTTACCAGTTAAGGTTTTAACAAAAATTTGCAT 1463654 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | |||||| || ||||| || | || |||||| || |||| | |||||||| Sbjct 1463726 CATCTTCAAGTTGTTTACCGGCAAAGATAAGCCTTTGCTGATCTGGAGGAATACCTTCTT 1463785 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| || || ||| || | ||| || || | || || || || | |||| Sbjct 1463786 TATCCTGGATCTTAGCTTTCACATTTTCAATTGTGTCAGATGGTTCTACTTCCAAAGTAA 1463845 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||||| ||||| || || ||||| |||||||| Sbjct 1463846 TTGTTTTACCAGTTAAGGTTTTAACAAAGATTTGCAT 1463882 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||| || || || | || || ||| |||||||||||||| || || Sbjct 1480828 ACCTCCTCTCAGCCTCAAAACGAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCCGA 1480887 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| ||||| |||||||| || || || |||| || || || | | Sbjct 1480888 AAGAGTG-CGTCCATCTTCCAACTGTTTTCCAGCGAAGATTAACCTCTGTTGATCTGGTG 1480946 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||||||||| ||| || || || | ||| || || | || || | Sbjct 1480947 GGATGCCTTCTTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTGTCGGATGGTTCGA 1481006 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || ||||| || || |||||||| || ||||||||||| Sbjct 1481007 CCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTTACGAATATTTGCAT 1481055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354771537959496