Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq157 185 1e-41 seq89 87.8 3e-12 >seq157 Length=245904 Score = 185 bits (204), Expect = 1e-41 Identities = 1046/1643 (64%), Gaps = 94/1643 (6%) Strand=Plus/Minus Query 7631 AAAGAAAATGCCAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTTGGTAGCTGGT 7690 || || || ||||| |||||| |||||||||||||| ||| ||| || | || ||| Sbjct 53952 AACGAGAACGCCAACAAAGACAGTAAAGTGATCCCTACCCAGCGCGACCTGCTGGCCGGT 53893 Query 7691 ACAGTGTCGAAACAATATGCACTGGAAGAATATC-TACCGAAGCACATTGCAGACGCTCA 7749 | || | || || ||||| | || | |||| | ||| || | | || || Sbjct 53892 ATCGTTGCCAAGCACTATGCCAAGCAACA-TATCCTGCCGCGCGACGTGGTGATTGCCCA 53834 Query 7750 T-ATCGACGGCGATATTCATTTTCACGACCTTGATTATAGCCCACTATTCCCGCAATTCA 7808 | | || ||| || ||||| | ||||| || || || ||| | |||||| |||| Sbjct 53833 TGAACG-CGGTGAAATTCACTACCACGATCTGGACTACTCCCCGTTCTTCCCGATGTTCA 53775 Query 7809 ACTGTATGCTTATCGACATCAAGGGGATGTT--CGAAGGTGGGTTCAAAATGGGTAACGC 7866 ||||||||||||||||| | | || ||||| | || | ||||||| ||||||||||| Sbjct 53774 ACTGTATGCTTATCGACCTTGAAGGCATGTTGACCAAAG--GGTTCAAGATGGGTAACGC 53717 Query 7867 TGAAATTGAAGAGCCAAATAGCATTGCGACTGCTGCGACTATCGTAACTCAGATCATTCA 7926 || ||||| |||||| ||| | || || || | | | || ||||| Sbjct 53716 AGAGATTGAGCCGCCAAAATCCATCTCAACCGCGACGGCAGTGACGGCCCAAATCATCGC 53657 Query 7927 GCAAGTAAGCAGCCACATCTATGGCGGCAACACAATCAATCGCATCGACGAAGTGCTTGC 7986 ||| || ||||||||||| ||||||| ||| || || || ||||| ||| | || || Sbjct 53656 GCAGGTGGCAAGCCACATCTACGGCGGCACCACCATTAACCGTATCGATGAAATTCTGGC 53597 Query 7987 TCCTTATGT--TCGCAAGTCGTACTACAAATGGTTAGAAATCG--GTCGAGAAGAACA-T 8041 || | || ||| || | || | || |||| || | ||| | ||| | Sbjct 53596 ACCGTTCGTCACCGCTAGCCATA--AAAAGCACCGGGAAACCGCTGATGAGTGGCACATT 53539 Query 8042 CCAGATTCAGATTCAAAAGCCGCGATCTTTGCTCGTAAACGTGTTGAGAAAGAAACGTAT 8101 || ||| | || | | | ||| | ||||| || | ||| || Sbjct 53538 CCCGATGCGGACGCCTATG-CGC-----TGTCTCGT--ACCT--------AGAGTGCTAC 53495 Query 8102 GATGCGTTTCAGACTTTTGAATACCAAGTCAATACAATGCAGACTTCAAATGGTCAGACA 8161 || || || ||| | | ||||| |||| ||||| |||| ||| | ||||||||||| Sbjct 53494 GACGCCTTCCAGTCGCTGGAATATGAAGTAAATACGCTGCACACTGCCAATGGTCAGACG 53435 Query 8162 CCATTCACGACAATCAACTTCGGTTTAGGTACTTCG--------TGGGAAGAGAAACTGA 8213 || ||| ||| ||| ||||| | || ||| |||||| | |||| Sbjct 53434 CCGTTC------GTCACCTTTGGTTTCG--ACCTCGGCACCAGTTGGGAATCGCGTCTGA 53383 Query 8214 TTCAGAAAAGCATTCTGCAAAATCGTATTGCTGGTCTAGGCAAGACTAAGAAAACTGCTA 8273 | ||| || ||| |||| || |||||||| ||||| ||||| | |||||||| Sbjct 53382 TCCAGCAATCCATCCTGCGCAACCGTATTGCCGGTCTGGGCAAAAACCGTAAAACTGCGG 53323 Query 8274 TCTTCCCGAAACTTGTTTTCACGTTGAAAGACGGTGTTAACTTGAAAGAAGGTGATCCTT 8333 | ||||| ||||| || ||| | | |||||||| || || | | ||||| Sbjct 53322 TGTTCCCCAAACTGGTGTTCGCTATCCGCGACGGTGTCAATCACAAGGCTGCCGATCCGA 53263 Query 8334 GTTACGGAATCAAGAAGCTTGCTCTTGAGTGTGCAAGTAAACGCATGTACCCAGACATTT 8393 || | |||||| | || || || || || | || || || |||||||| || || Sbjct 53262 ACTATGACATCAAGCAACTGGCACTGGATTGCTCCAGCAAGCGGATGTACCCGGATATCC 53203 Query 8394 TGAACTATGAAAAGCTAGTTGAAACAACTGGCGGATTCAAGTCGCCTATGGGATGTC-GT 8452 | || || || || | ||| | || ||| || ||| |||| ||||| || | Sbjct 53202 TCAATTACGATCAGGTTGTTAAGGTTACCGGCTCGTTTAAGACGCCCATGGGCTGCCACA 53143 Query 8453 TCATTCTTGG-GTGAATGGAAAAATGAAGATGGCGAAACTG-TATTCGACGGTCGTAATA 8510 | | ||||| ||| ||| | ||||| ||| || | | | ||| ||||| || | Sbjct 53142 GCTTCCTTGGCGTGTATG-----AGGAAGAGGGC-AAGCAGATCCACGATGGTCGCAACA 53089 Query 8511 ACTTAGGTGTTGTTTCTATAAACATCCCGCGTATTGCAATCGAAGCGTCGGGAGACACTG 8570 || | || || | | ||| | ||||| || || | |||| ||| | ||| | Sbjct 53088 ACCTCGGGGTAATCAGCCTCAACCTGCCGCGCATCGCGCTGGAAG---CGGAACACAACG 53032 Query 8571 AA---CGTTTCTTCGAGATCTTGCACGAACGT-TGTACACTAGCTTACGAAGCGTTGATG 8626 || ||||||| | | || | | ||| || | ||| || | ||||||||||| Sbjct 53031 AAGAGCGTTTCTGGAACCTGCTGGATAATCGTCTGCA-ACTGGCGAAAAAAGCGTTGATG 52973 Query 8627 TTGCGTATCAAGCGTTTTGACGATGTTACTGCATCAGTTGCACCGATTCTGTACTGTGAA 8686 ||| ||| |||||| || | || | || || || ||||| ||||| ||| Sbjct 52972 ACGCGCATCGCGCGTTTGGAAAACGTCAAAGCCCGTGTCGCTCCGATCCTGTATATGGAA 52913 Query 8687 GGCGCTATGGGCGTACGCTTGAAGCCAACTGATAAAGTCAGTGAAGTGTTCAAGAACGGT 8746 || || || |||||| |||| || || || ||| ||| | ||||| |||||| Sbjct 52912 GGTGCCTGCGGTGTACGCCTGAAAGCAGACGACAACGTCGCTGAGATCTTCAAAAACGGT 52853 Query 8747 CGCGCAAGTATCTCACTCG-GTTACATCGGTCTGCATGAG-GCTGTAACGCTGCTTTCGC 8804 || ||| |||||| | | | || || || | |||||| | |||||| ||| | Sbjct 52852 CGGGCATCGATCTCATTGGAGCTATATTGGGGTTCATGAGACCATTAACGC-GCT---GT 52797 Query 8805 CTGACAA--AGACATGCACACATTCGAGTCGCAGCACAAGCAATTCCTTGCTGAAAAG-- 8860 || ||| ||||| ||| ||||| || | ||||| || ||||||| Sbjct 52796 TTGGCAACCAGACA--CACGTGTTCGA----CA--ATGAGCAA---CTGCGTGAAAAGGC 52748 Query 8861 -------ATTGTTGAGACG-CTTAGAGCGTACACAGACGCATGGAAAGAACTGACTGGCT 8912 || || | ||| || | ||| || || ||||||||| || |||| Sbjct 52747 GGTCGCCATCGTCG-CACGCCTGAAAGCCGCGACCGATCAGTGGAAAGAAGAAACCGGCT 52689 Query 8913 ACGGATTCAGTCTATACAGCACGCCAAGCGAATCGCTATGTGATCGTTTCTGTCGTCTCG 8972 |||| ||||| || ||||| ||||| || ||| || ||||| |||||||| ||| ||| Sbjct 52688 ACGGTTTCAGCCTTTACAGTACGCCGAGTGAAAACCTGTGTGACCGTTTCTGCCGTATCG 52629 Query 8973 ATCAAGAGAAATACGGTATCATTACGGGTATCAACGACAAAGACTATTACACGAACTCGT 9032 | | ||| ||| | | | || | | ||| |||| || ||||| ||| | Sbjct 52628 ACACCGCTGAATTCGGCGTGGTACCAGGCGTGACCGATAAAGGTTACTACACCAACAGCT 52569 Query 9033 TTCACTTAGATGTGTTCAAGAAAGTGAATCCGTTCGAGAAGATTGATTTCGAAGCAGCAT 9092 ||||| | || ||| ||||| |||||||| | | |||| || || || ||| | | Sbjct 52568 TTCACCTGGACGTGGAGAAGAAGGTGAATCCTTACCAGAAAATCGACTTTGAACTGCCCT 52509 Query 9093 ACCCAATTCATGCGAATGGTGGTTTCATCTGCTATGCTGAATTCCCGAACATGCGAGACA 9152 ||||| | || || || || ||||| ||||| | || | |||||| ||| | | | Sbjct 52508 ACCCACCGCTGGCAAACGGAGGCTTCATTTGCTACGGCGAGTATCCGAACCTGCAACATA 52449 Query 9153 ACATCAAAGGTCTAGAGCGCGTATGGGATTACGCATATAAGAAAGTTGCGTACTTCGGCA 9212 || |||||| || || ||| ||||||||| |||| || | || | ||||| Sbjct 52448 ACCTCAAAGCGCTGGAAGACGTCTGGGATTACAGCTATAGCCGTGTGCCCTATTACGGCA 52389 Query 9213 CAAACACGCCGATTGACCAGTGT 9235 | || |||||||| || ||||| Sbjct 52388 CCAATACGCCGATCGATGAGTGT 52366 >seq89 Length=3091062 Score = 87.8 bits (96), Expect = 3e-12 Identities = 213/320 (67%), Gaps = 2/320 (1%) Strand=Plus/Plus Query 8918 TTCAGTCTATACAGCACGCCAAGCGAATCGCTATGTGATCGTTTCTGTCGTCTCGATCAA 8977 ||||| | || ||||| ||||| ||||| ||| |||||||| ||| | || ||| Sbjct 557312 TTCAGCGTTTATAGCACACCAAGTGAATCTCTAACCGATCGTTTTTGTAGACTTGATATG 557371 Query 8978 GAGAAATACGGTATCATTACGGGTATCAACGACAAAGACTATTACACGAACTCGTTTCAC 9037 || ||||| ||| || || ||| ||||||| ||||| || || || ||| Sbjct 557372 GAAAAATATGGTGAAATACCGAACGTCACTGACAAAGGATATTATCAAAATTCATTCCAC 557431 Query 9038 TTAGATGTGTTCAAGAAAGTGAATCCGTTCGAGAAGATTGATTTCGAAGCAGCATACCCA 9097 | |||||| || | | | || || ||||| |||||||| ||| | || || Sbjct 557432 TATGATGTGAGAAAAGATATTACACCATTTGAGAAAATTGATTTTGAAAAGGATTATCCT 557491 Query 9098 ATTCATGCGAATGGTGGTTTCATCTGCTATGCTGAATTCCCGAACATGCGAGACAACATC 9157 || |||| | |||||||| |||| || ||||| ||||| | | || | Sbjct 557492 TTTTATGCAAGTGGTGGTTACATCCATTACTGTGAATATCCGAAATTAAATCATAATTTA 557551 Query 9158 AAAGGTCTAGA-GCGCGTATGGGATTACGCATATAAGAAAGTTGCGTACTTCGGCACAAA 9216 |||| |||| ||| ||||||||||| ||||| | || || || || ||||| || Sbjct 557552 AAAGCCTTAGAAGCG-GTATGGGATTATTCATATGATAAGGTAAGTTATTTAGGCACGAA 557610 Query 9217 CACGCCGATTGACCAGTGTA 9236 || |||||||| || |||| Sbjct 557611 CATTCCGATTGATCATTGTA 557630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783327071952480