Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq46 113 4e-20 >seq46 Length=4728336 Score = 113 bits (124), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| | ||| || || | || ||||| ||||||||||| || |||||||| Sbjct 1480373 CCTCCTCTGAGCCTTAAAACAAGGTGGAGTGTGGATTCTTTTTGGATATTGTAATCTG-- 1480430 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| | | || |||||| | ||||||||| ||| |||| | ||||| ||||| | Sbjct 1480431 ATAATGTACGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAATCTCTGCTGATCTGGAG 1480490 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| |||||| ||| || | ||| | ||| |||||| Sbjct 1480491 GGATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTTTCAATTGTATCAGAAGGTTCGA 1480550 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||| ||| || ||||| || || || ||||| ||||| ||||||||| Sbjct 1480551 CTTCCAAGGTGATTGTTTTCCCTGTTAATGTTTTCACAAAGATTTGCATT 1480600 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||| ||||| ||||| ||||| | |||| || ||| || Sbjct 1481759 ACCAAGTGCAGAGTCGATTCCTTTTGAATGTTATAATCCGAGAGAGTTCTACCATCCTCA 1481818 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGGCACGCCTTCTTTGTCGGC 20118 | ||| ||||| || |||| ||||| ||||| || | |||| | ||||||||||| Sbjct 1481819 AGTTGCTTGCCAGCGAAAATCAGCCTTTGTTGGTCTGGCGGG-ATACCTTCTTTGTCCTG 1481877 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||||| ||||| | ||| | ||| ||| || ||||| || |||||||| Sbjct 1481878 GATTTTGGCCTTCACATTCTCAATTGTATCTGAAGGCTCAACTTCCAATGTGATGGTTTT 1481937 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 |||||||| ||||| ||||| || |||||| || Sbjct 1481938 TCCGGTCAAAGTTTTCACAAAGATCTGCATTGTT 1481971 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/237 (69%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 19974 ATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGT 20033 || ||| |||||||| | |||| || | || || ||||||||||| || || |||| Sbjct 1479909 ATTATTGGCCTCCTCGGAGTCTCAGTACGAGGTGGAGAGTAGATTCTTTCTGAATATTGT 1479968 Query 20034 AATCGCCCATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTG 20091 ||||| | ||| | || |||||||| ||| ||||| ||| | || ||||| || || Sbjct 1479969 AATCG--GAGAGTGTACGACCATCTTCCAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTG 1480026 Query 20092 ATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCC 20151 ||| ||| | |||||||| || ||||| ||| || | ||| | ||| Sbjct 1480027 ATCTGGGGGAATTCCTTCTTTATCTTGGATTTTGGCTTTTACGTTTTCAATGGTATCTGA 1480086 Query 20152 AGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || ||| | || ||||||||||| ||||| || ||||| || || ||||| Sbjct 1480087 TGGCTCGACTTCGAGAGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 1480143 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||||| | |||||||| | || ||||| ||||| ||||| ||||| Sbjct 1481057 CCTCCTCTCAACCTGAGAACCAAATGCAAAGTCGATTCCTTTTGAATGTTATAATCTGAG 1481116 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || ||| || | |||||| || ||| |||| |||||||| || || ||| Sbjct 1481117 AGCGTACGCCCATCCTCGAGTTGTTTTCCGGCAAAAATCAGCCTCTGCTGGTCTGGGGGA 1481176 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||||||| ||||| ||| || | ||| || || || || | Sbjct 1481177 ATGCCTTCTTTGTCTTGTATTTTAGCTTTGACATTTTCAATAGTGTCTGATGGCTCGACT 1481236 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || ||||| || ||||| | ||||| |||||||||||||| Sbjct 1481237 TCTAAAGTTATGGTCTTTCCGGTTAGAGTTTTAACAAAAATTTGCAT 1481283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419580030565962