Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq157 354 1e-92 >seq157 Length=245904 Score = 354 bits (392), Expect = 1e-92 Identities = 1110/1691 (66%), Gaps = 55/1691 (3%) Strand=Plus/Plus Query 37107 GTCATGATTACCACATTTAGGACATTCGTACCCTTTGGAAGTAGCAGTGAA-TTCACCG- 37164 ||| ||||| |||||||| || || | | |||||| || ||| | || ||||||| Sbjct 52291 GTCGTGATTGCCACATTTCGGGCAGGTGAAGCCTTTGCTGGT-GCACTCAAATTCACCGG 52349 Query 37165 TGATAGCCACATTCAAAGCAAACATCAACAGGAGTATTTGTTCCGTAATACGGTGTGTTC 37224 ||| ||||||| ||| | || |||| | || ||||| || |||||||| || | Sbjct 52350 TGA-AGCCACACTCATAACACTCATCGATCGGCGTATTGGTGCCGTAATAGGGCACA--C 52406 Query 37225 AGATA-AGCA-TAATCCCAAACGTCTTCCAACGCTTTCAGATTATTTTTCATATTCGGAT 37282 | || ||| |||||||| |||||||||| |||||| || |||| || || ||||||| Sbjct 52407 GGCTATAGCTGTAATCCCAGACGTCTTCCAGCGCTTTGAGGTTATGTTGCAGGTTCGGAT 52466 Query 37283 ATTCTCCGTATGAAATAAATCCACCTGAACTCAGAGGAATAAATTGCTTTTCAAAATCAA 37342 | || ||||| |||| || || || ||| || | || |||||| || | Sbjct 52467 ACTCGCCGTAGCAAATGAAGCCTCCGTTTGCCAGCGGTGGGTAGGGCAGTTCAAAGTCGA 52526 Query 37343 TCTTGTCATAAGGATTGGTATTATGACGGACGTCGAGGTGGAAGCTGTTTGTGTAATAAT 37402 | || | |||||||| || | ||||| ||||| |||||||| ||||| ||| Sbjct 52527 TTTTCTGGTAAGGATTCACCTTCTTCTCCACGTCCAGGTGAAAGCTGTTGGTGTAGTAAC 52586 Query 37403 CTTTATCGAACACTT----TATGA-GTCGGATAAAGTTCGCTATCAATTTTAGCGAAACG 37457 |||||||| ||| || | | || || || || | || || |||||| Sbjct 52587 CTTTATCGGTCACGCCTGGTACCACGCCGAATTCAG--CGGTGTCGATACGGCAGAAACG 52644 Query 37458 ATAGCACAGGCTTTCAGATGGAGTACCGTACAGGCTGAAAGCCAAACCAGTTTCAGCTTT 37517 | |||||| ||||| || |||| ||| ||||||||| | | || ||||| |||| Sbjct 52645 GTCACACAGGTTTTCACTCGGCGTACTGTAAAGGCTGAAACCGTAGCCGGTTTCTTCTTT 52704 Query 37518 CCAAGAATCGGTAATCTCTTTCATGTGTTTAAGAACAGAC-AGAGCGAACACTTGTTTG- 37575 ||| |||||| |||||| | || ||| | |||| | | | || Sbjct 52705 CCACTGATCGGTCGCGGCTTTCAGGCGTGC-------GACGATGGCGACCGCCTTTTCAC 52757 Query 37576 ---GTT--TGATTCTCCATGATGTGTTCATCGATACCATACATCATGATTTCACTCAGTT 37630 ||| | ||| || | | |||| | | | ||| ||| | | | || | Sbjct 52758 GCAGTTGCTCATTGTCGAACACGTGTGTCTGGTTGCCAAACAGCGCGTTAATGGTC---T 52814 Query 37631 CATGCAGGCCGATATAGC-CGATACTGACAGAAGCGCGTCCATTTTCAAATGCTTTCAT- 37688 |||| | || ||||||| | | || || || || || |||| || | | ||| Sbjct 52815 CATGAACCCCAATATAGCTCCAATGAGATCGATGCCCGACCGTTTTTGAA-GATCTCAGC 52873 Query 37689 GATATCGTCATCTGGATTCAGACGTACACCGCAGGCGCCTTCGACGTAAAGAATCGGAGC 37748 || | ||| |||| ||||| |||||||||||||| ||||| | || || |||||||| Sbjct 52874 GACGTTGTCGTCTGCTTTCAGGCGTACACCGCAGGCACCTTCCATATACAGGATCGGAGC 52933 Query 37749 CACGCTTGCCTTAACGCCACGCAGACGATCAACACGTACCATTAGAGCTTGTTTAACTAC 37808 || | || || ||| || ||| | | || ||| | |||| ||| | | Sbjct 52934 GACACGGGCTTTGACGTTTTCCAAACGCGCGATGCGCGTCATCAACGCTTTTTTCGCCAG 52993 Query 37809 TTCCATACGCTCTTCCAGAAGCTCCCAGAAACGCATATGATTGCCGTTTGCGTCGAGTGC 37868 || || ||| | ||||| || | |||||||||| | ||| | || || || || Sbjct 52994 TTGCAGACGATTATCCAGCAGGTTCCAGAAACGCTCTTCGTTGTGTTCCGCTTCCAGCGC 53053 Query 37869 GATACGCGGCAGATTCAGAGTAACAACCCCTAGATTATTACGACCTTCGTGAACTTCATT 37928 ||| |||||||| || || | | ||||| || || || ||||| ||||| | | || Sbjct 53054 GATGCGCGGCAGGTTGAGGCTGATTACCCCGAGGTTGTTGCGACCATCGTGGATCTGCTT 53113 Query 37929 GCCATTTTCGTCTTCCCAACGATGCAAGAAA-CTGCGGCATCCCATAGGGAACTTAAAGC 37987 ||| | ||| || | | ||| |||| || ||| |||| ||||| || |||||| Sbjct 53114 GCCCTCTTCCTCATAC--ACGC--CAAGGAAGCTGTGGCAGCCCATGGGCGTCTTAAACG 53169 Query 37988 TGCCAGTTGTTTCAACAACTTTATCATAACTCAGAATATCTGGATACATACGCTTAGAAG 38047 ||| || | |||||| | ||| ||| | || ||||| || ||||| ||||| | Sbjct 53170 AGCCGGTAACCTTAACAACCTGATCGTAATTGAGGATATCCGGGTACATCCGCTTGCTGG 53229 Query 38048 CGCACTCCAGTGCCAGTTGCTTGATACGATAAAGCGGGTCAGTTGGCTTCAAGTTGTGTC 38107 ||| |||||||||||||||||||| ||| ||| || | | ||| ||| | Sbjct 53230 AGCAATCCAGTGCCAGTTGCTTGATGTCATAGTTCGGATCGGCAGCCTTGTGATTGACAC 53289 Query 38108 CGTCTTTCAGAGCAAACACCAGTTTCGGGAACACCGGAGTGATACCCTCTTTGCCAAGTC 38167 |||| | ||| ||||||||||| |||||||||| ||| ||| | |||||| || | Sbjct 53290 CGTCGCGGATAGCGAACACCAGTTTGGGGAACACCGCAGTTTTACGGTTTTTGCCCAGAC 53349 Query 38168 CAGCCAGTCGAACTTTCAAGATCGCTTCCTGAATCAGTTCAGCTTCCCAGCTTTCACCCA 38227 | || | || || ||| | || ||| ||||| | |||||| || || | Sbjct 53350 CGGCAATACGGTTGCGCAGGATGGATTGCTGGATCAGACGCGATTCCCAACTGGTGCCGA 53409 Query 38228 GACCAAAGCCGAATGTACAGAAGGGAGTTTGACCGTTCGCGGAGTGAAGAGTGTTCACCT 38287 | | || || || || ||| || || ||||| || || | ||| || || || || | Sbjct 53410 GGTCGAAACCAAAGGTGACGAACGGCGTCTGACCATTGGCAGTGTGCAGCGTATTTACTT 53469 Query 38288 CGTATTCGAGTCCCTGCATTGCATCATA-CACAGCTTTGT--GAGTCTTTGCAATAGCGT 38344 | ||||| || ||| | || || || ||| || || ||| | | || | Sbjct 53470 CATATTCCAGCGACTGGAAGGCGTCGTAGCAC-TCTAGGTACGAGAC------AGCGCAT 53522 Query 38345 ATTCTTTCGCATCTGGAATTTTCCAATAACGGGCTTCGTCCAAATGCTTTTCATGAGTCA 38404 | | | |||||| ||||| | ||| | | || ||| ||||||| ||| | Sbjct 53523 AGGCGTCCGCATCGGGAATGTGCCACTCATCAGCGGTTTCCCGGTGCTTTTTATGGCTAG 53582 Query 38405 TCTTAACATACGGTGCCAGCACTTCGTCAATACGATTAATTGTGTTGCCGCCGTAAATGT 38464 | || |||||||||| | ||| || ||||| ||||| ||| |||||||||| |||| Sbjct 53583 CGGTGACGAACGGTGCCAGAATTTCATCGATACGGTTAATGGTGGTGCCGCCGTAGATGT 53642 Query 38465 GACTTGCTACTTGCGCAATAATCTGAGCGACTACGGCAGCAGCGGTAGAAATGCTTTTCG 38524 | ||||| || ||||| || || || || || || | ||||| || ||| ||| | Sbjct 53643 GGCTTGCCACCTGCGCGATGATTTGGGCCGTCACTGCCGTCGCGGTTGAGATGGATTTTG 53702 Query 38525 GAGTTTCGATCTGTGCATTTCCCATACGGAACCC-GCGATCTAACATGCCTTTGACATCT 38583 | | || |||| ||| || ||||| |||||| | || |||||||||| | || Sbjct 53703 GCGGCTCAATCTCTGCGTTACCCATCTTGAACCCTTTGGTC-AACATGCCTTCAAGGTCG 53761 Query 38584 ATCAACATGCAGTTAAACATTGGGAAGAATGGAGAATAGTCAAGATCATGGAAGTGCAGC 38643 || | ||| ||||| ||||| |||||||| || || ||||| ||||| ||| |||| | Sbjct 53762 ATAAGCATACAGTTGAACATCGGGAAGAACGGGGAGTAGTCCAGATCGTGGTAGTGAATT 53821 Query 38644 CAGCCTTTTTCGTGTGCTTGCATAACTTCAACAGGAAG---ATAATGCTTTGCAAAGTGC 38700 || ||| || || || || || || || || ||||| ||| ||||| Sbjct 53822 TCACCGCGTTCATGGGCAATCACCACGTCGCGCGGCAGGATATGTTGCTTGGCATAGTGC 53881 Query 38701 TTACTAACAATACCAGCAACCAGATCGCGTTGAGTAGGGATTACTTTAGCGTCTTTGTTA 38760 || ||| ||||| || | ||| ||||| || |||||||| |||||| ||||||||| Sbjct 53882 TTGGCAACGATACCGGCCAGCAGGTCGCGCTGGGTAGGGATCACTTTACTGTCTTTGTTG 53941 Query 38761 GCATTCTCATT 38771 || ||||| || Sbjct 53942 GCGTTCTCGTT 53952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746207722480480