Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq46 196 1e-44 seq13 96.9 8e-15 seq74 86.0 1e-11 >seq46 Length=4728336 Score = 196 bits (216), Expect = 1e-44 Identities = 182/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| ||||| | || || || | ||| |||||||||||||| || ||||| Sbjct 1463653 ATTCCACCTCTGAGCCTCAAGACAAGGTGAAGTGTCGATTCTTTCTGAATGTTGTAGTCG 1463712 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||| ||| ||||| |||||||| || ||||| || ||||| || ||||| ||| Sbjct 1463713 GAAAGAGTTCGACCATCTTCAAGTTGTTTACCGGCAAAGATAAGCCTTTGCTGATCTGGA 1463772 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||| ||||| ||||| |||||||| | || || |||||| Sbjct 1463773 GGAATACCTTCTTTATCCTGGATCTTAGCTTTCACATTTTCAATTGTGTCAGATGGTTCT 1463832 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | ||||| || |||||||| | ||||| ||||| || |||||| Sbjct 1463833 ACTTCCAAAGTAATTGTTTTACCAGTTAAGGTTTTAACAAAGATTTGCATT 1463883 Score = 190 bits (210), Expect = 5e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | || || || | || |||||||| ||||| ||||||||| Sbjct 1481510 ATGCCTCCTCTCAATCTCAACACAAGGTGGAGGGTTGATTCTTTTTGAATGTTATAGTCA 1481569 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| ||| ||||| || ||||||||||| ||||| | |||||| ||||| || Sbjct 1481570 GAAAGGGTTCGACCATCTTCAAGCTGTTTTCCAGCGAAAATCAACCTCTGCTGATCTGGG 1481629 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| || |||||||| || |||||||| | || ||| ||| ||| Sbjct 1481630 GGGATTCCTTCTTTATCTTGGATCTTTGCCTTGACATTTTCAATAGTGTCGGAAGGCTCT 1481689 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || |||||||||||||| || || | || ||||| || |||||||| Sbjct 1481690 ACTTCAAGTGTAATAGTCTTGCCGGTTAAAGTCTTTACGAAGATCTGCAT 1481739 Score = 176 bits (194), Expect = 1e-38 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| ||||| | ||||||||||||||||| ||||| || || || |||| |||||||| Sbjct 1481302 TACAAGATGGAGGGTAGATTCTTTCTGAATGTTATAATCGGAAAGTGTTCGGCCGTCTTC 1481361 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 ||||| ||||| |||||||| | |||||| ||||| ||||| || || |||||||| || Sbjct 1481362 AAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGAATACCCTCTTTATCTTG 1481421 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 |||||| ||||| |||||||| | ||||| ||| || || || | || || ||||| Sbjct 1481422 AATCTTAGCTTTAACATTTTCAATTGTATCAGAAGGCTCGACTTCCAAAGTGATGGTCTT 1481481 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || |||||||| Sbjct 1481482 TCCTGTAAGAGTCTTCACGAAGATCTGCAT 1481511 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| ||||| | || || || | || |||||||| |||||||| ||||| Sbjct 1480826 ATACCTCCTCTCAGCCTCAAAACGAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCC 1480885 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| | ||||||||||| || |||| |||||||||||| || Sbjct 1480886 GAAAGAGTGCGTCCATCTTCCAACTGTTTTCCAGCGAAGATTAACCTCTGTTGATCTGGT 1480945 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||||||||| || || |||||||| | || ||| ||||| Sbjct 1480946 GGGATGCCTTCTTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTGTCGGATGGTTCG 1481005 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || || || | || ||||| ||||| ||||| Sbjct 1481006 ACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTTACGAATATTTGCAT 1481055 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| ||||| | || ||||| | || ||||||||||| || || || || Sbjct 1480142 ATGCCGCCTCTGAGCCTCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCC 1480201 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| | ||| |||||||||||||||| |||||| || || ||| Sbjct 1480202 GAAAGTGTGCGTCCGTCTTCCAATTGCTTTCCAGCAAAAATTAACCTCTGCTGGTCTGGA 1480261 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||||||||| ||||| ||||| || | ||| || || || Sbjct 1480262 GGGATCCCTTCCTTATCCTGAATCTTAGCTTTGACATTATCAATGGTGTCAGATGGCTCG 1480321 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| || || | ||||| ||||| || ||||| Sbjct 1480322 ACTTCGAGGGTGATTGTCTTTCCTGTTAAAGTTTTCACAAAGATTTGCAT 1480371 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | ||||| || || ||||| | || ||||||||||| || ||||| ||| Sbjct 1480598 ATTCCACCACGGAGCCTTAGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTATAATCA 1480657 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||||| || || || ||||| || |||||||| || || || Sbjct 1480658 GAAAGAGTGCGCCCATCTTCTAACTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGT 1480717 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||||||||| || ||||| |||||||| | ||||| ||||| Sbjct 1480718 GGGATACCTTCTTTATCCTGAATTTTCGCTTTGACATTTTCAATCGTATCCGATGGTTCG 1480777 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| || || | ||||| ||||| || ||||| Sbjct 1480778 ACTTCAAGAGTGATCGTCTTTCCTGTTAAAGTTTTCACAAAGATTTGCAT 1480827 Score = 159 bits (176), Expect = 8e-34 Identities = 148/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| ||||| | || ||||| | ||| |||||||||||||| ||||| || Sbjct 1463881 ATTCCGCCTCTGAGCCTCAAGACAAGATGAAGTGTTGATTCTTTCTGAATGTTATAATCC 1463940 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| | |||||||| || || |||| |||||||||||| || Sbjct 1463941 GAAAGAGTGCGTCCATCTTCCAACTGTTTTCCGGCGAAGATTAACCTCTGTTGATCTGGT 1464000 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||||||||| || || |||||||| | || ||| ||||| Sbjct 1464001 GGGATGCCTTCTTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTGTCGGATGGTTCG 1464060 Query 104510 ACCTCTAG 104517 ||||| || Sbjct 1464061 ACCTCAAG 1464068 Score = 158 bits (174), Expect = 3e-33 Identities = 176/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 104328 TTATT--CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATA 104385 ||||| || |||| || || ||||| || || | |||||||||||||||||||| || Sbjct 1479910 TTATTGGCCTCCTCGGAGTCTCAGTACGAGGTGGAGAGTAGATTCTTTCTGAATATTGTA 1479969 Query 104386 GTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATC 104445 || || || || | ||| ||||| ||||| || || ||||| || ||||| || ||||| Sbjct 1479970 ATCGGAGAGTGTACGACCATCTTCCAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGATC 1480029 Query 104446 AGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG 104505 || || |||||||||||||| || || || |||||||| ||||| | |||||| || Sbjct 1480030 TGGGGGAATTCCTTCTTTATCTTGGATTTTGGCTTTTACGTTTTCAATGGTATCTGATGG 1480089 Query 104506 TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || ||||| | || || || || |||||||| Sbjct 1480090 CTCGACTTCGAGAGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 1480143 Score = 145 bits (160), Expect = 2e-29 Identities = 175/237 (74%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 104325 TATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||||| || || ||||| | ||| || || | ||| || || ||||| || ||||| || Sbjct 1481047 TATTTGCATACCTCCTCTCAACCTGAGAACCAAATGCAAAGTCGATTCCTTTTGAATGTT 1481106 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 ||| || || || || | || || || ||||||||||| |||||||| |||||||| || Sbjct 1481107 ATAATCTGAGAGCGTACGCCCATCCTCGAGTTGTTTTCCGGCAAAAATCAGCCTCTGCTG 1481166 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 || || || || |||||||| || || || || ||||| |||||||| | || || Sbjct 1481167 GTCTGGGGGAATGCCTTCTTTGTCTTGTATTTTAGCTTTGACATTTTCAATAGTGTCTGA 1481226 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||| || || ||||| || || || ||||| ||||| || ||||| Sbjct 1481227 TGGCTCGACTTCTAAAGTTATGGTCTTTCCGGTTAGAGTTTTAACAAAAATTTGCAT 1481283 Score = 143 bits (158), Expect = 6e-29 Identities = 176/239 (74%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | || | || ||||| || ||||| ||||| || Sbjct 1481738 ATCCCACCTCTGAGACGGAGGACCAAGTGCAGAGTCGATTCCTTTTGAATGTTATAATCC 1481797 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||| || || ||||| || ||||| ||||| ||||| ||||| || || Sbjct 1481798 GAGAGAGTTCTACCATCCTCAAGTTGCTTGCCAGCGAAAATCAGCCTTTGTTGGTCTGGC 1481857 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| || || || || ||||| || | ||||| ||| || Sbjct 1481858 GGGATACCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATTGTATCTGAAGGCTCA 1481917 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT-TTGTGTA 104567 || || | ||| || || || || || | ||||| ||||| ||||||||| || |||| Sbjct 1481918 ACTTCCAATGTGATGGTTTTTCCGGTCAAAGTTTTCACAAAGATCTGCATTGTTCTGTA 1481976 Score = 127 bits (140), Expect = 5e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | ||| | || || || | || |||||||| || || || |||||| Sbjct 1570258 ATACCTCCTCTCAACCTCAAAACAAGGTGGAGGGTGGATTCTTTTTGGATGTTGTAGTCA 1570199 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| || || || || ||||| || || || | ||||| || || || Sbjct 1570198 GAAAGCGTACGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGG 1570139 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || || || || ||||| ||||| || | ||| || || || Sbjct 1570138 GGAATTCCTTCCTTGTCTTGGATTTTAGCTTTGACATTGTCAATGGTGTCCGATGGCTCA 1570079 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA 104567 || || | || || ||||| |||||||| || || || || ||||||||||| |||| Sbjct 1570078 ACTTCCAAAGTGATTGTCTTTCCAGTAAGAGTCTTCACGAAGATCTGCATTTTCTGTA 1570021 >seq13 Length=9188118 Score = 96.9 bits (106), Expect = 8e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 268809 ATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTG 268868 ||||| | || || || || || || || ||| |||| || || | || ||||| | Sbjct 3474926 ATTGGGAGAACTTGAAGCCTGATGAGAGGCACTTTTTATCGCATGTTTTAGCATTTTTCG 3474867 Query 268869 CAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGA 268928 | | || || || || || |||||||| || || ||| | |||||| || || Sbjct 3474866 CTGCATCGGACGGGATTGTAAATGAAAATCTTGTCGAACGGTTTTCTCAAGAAGTCCAAG 3474807 Query 268929 TTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGA 268988 | ||||||| || ||||| ||||| || ||||| || ||||||||||| ||||| || | Sbjct 3474806 TGACTGAAGCGAGGTGTTTCTACGGTTTTCAGATCGCAATAGAAAATATCCATTCCGAAA 3474747 Query 268989 TGTACAGTCTATTAATAGATACTTATAT 269016 |||| || |||| |||||||| || Sbjct 3474746 TGTATTCACTTCTAATCGATACTTACAT 3474719 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/192 (70%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 269059 AACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT---AAACGATAG 269115 ||| ||||| ||||| | || || | |||||||| || |||||| || ||||| Sbjct 3474587 AACCATGGAGTGTGTTAAGAAGAAGGCAGAATGGGCATTGTCATGGATCTCAAGCGATAA 3474528 Query 269116 CGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGG 269175 ||| | | ||| || | | || ||||||||||| || || || || || || || || Sbjct 3474527 AGCGACCTTCGGCGAGCGAGTCGTGGCTTTTGCCGCCGTCGAGGGAATCTTTTTCTCCGG 3474468 Query 269176 GTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTC 269235 ||| ||||| || || ||| |||| ||| | |||||| | || || | |||||| Sbjct 3474467 CAGTTTCGCCGCGATATTCTGGATGAAAAAACGTGGCCTTCTACCTGGGCTGACTTTCAG 3474408 Query 269236 TAACGAATTGAT 269247 ||||||||||| Sbjct 3474407 CAACGAATTGAT 3474396 >seq74 Length=3691182 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/202 (71%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 238571 AGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACT--AGGC 238628 |||| | || || ||| ||||||||||| || ||||| || | || ||| ||| Sbjct 1881512 AGCCAAGACGCATGATGATCTATGGAATTCGGCTCAGATCCAGTTA--AATACTGAAGGA 1881569 Query 238629 AAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGA-CTAGATC 238687 |||||||| ||||| | | ||||||||||| ||||| ||||| ||||||| | ||| Sbjct 1881570 AAAATGCACGGTTTCCTGAGGATGTATTGGGCGAAAAAAATACTCGAATGGACCCAGA-G 1881628 Query 238688 TCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGGTAC 238747 ||| | || ||||| ||| | | |||| ||||||| || ||| | || || | Sbjct 1881629 TCCTGAAGATGCTCTGAGAGTTGCTCTTTACTTGAACGACAAGTACAGCTTAGATGGGAG 1881688 Query 238748 GGATCCTAACGGATACGTAGGT 238769 ||| || || |||| ||| ||| Sbjct 1881689 GGACCCAAATGGATTCGTTGGT 1881710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151377717286616