Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_005355.1 Length=40190 Score E Sequences producing significant alignments: (Bits) Value seq89 127 5e-25 >seq89 Length=3091062 Score = 127 bits (140), Expect = 5e-25 Identities = 180/248 (73%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 1459 TAAATTATCTACAGCATATTGTGCTTCTTCTGGAGTAAATTTGTCCCCAGAATTAGAAGT 1518 ||||| |||| |||||||||||||||||| |||||||| ||||||| || |||||| Sbjct 2724095 TAAATGGTCTATTGCATATTGTGCTTCTTCTTCTGTAAATTTATCCCCAGCATCAGAAGT 2724036 Query 1519 TAATTGATCTT-TAATTTCTGCTGTAGACATATTCATATCTTTTTGG-TAAGTTTTAGCA 1576 | |||||| | ||||| | | | |||||| ||| | | | | ||| ||||||| Sbjct 2724035 AAGTTGATCGTATAATTCATTGTCT-GACATACCCAT-TATGTCGGTATAATTTTTAGCT 2723978 Query 1577 CTTTCTAAAGCATTTTTATTCCAATCAGCTTTAACATGATCAACAGCATATTTTGCAGCA 1636 ||| || ||||||| || ||| |||| | || || || ||||||| |||||| Sbjct 2723977 GATTCCAATGCATTTTCTTTATAATTTGCTTCTAAATTGTCTACTGCATATTGAGCAGCA 2723918 Query 1637 TCTTCTGGGAATTTATCTCCAGATTTGGAAATTAGTTGATCATAAATTGCGGCCTTAGAC 1696 || || || ||| |||||| | |||| ||| ||| || || ||| | || |||||| Sbjct 2723917 TCATCAGGATATTCATCTCCTGCAGAGGAAGTTAATTGGTCGTATATTCCTGCTTTAGAC 2723858 Query 1697 ATATGCAT 1704 |||||||| Sbjct 2723857 ATATGCAT 2723850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128484260862048