Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq157 179 9e-41 >seq157 Length=245904 Score = 179 bits (198), Expect = 9e-41 Identities = 285/401 (71%), Gaps = 12/401 (3%) Strand=Plus/Plus Query 3710 TCGAGCGGGGCCAGCTCGACCATTTCGCATCGCTGCACGACTTCCCGGACGTCCTGGTTG 3769 || ||||| | ||| || | || |||||| ||||| || ||||||| ||| || | | Sbjct 168763 TCCAGCGGCGGCAGGTCAATCACTTCGCAGCGCTGTACCACTTCCCTGACCGCCAGCAGG 168822 Query 3770 CGCTCGGACAGCTTGACCTTCAGCTCCGGCTGGCCGATCAGGATGATGGACAGCAGCTTC 3829 |||||||| | |||| | ||| || || || || | ||||| |||||||||||| || Sbjct 168823 CGCTCGGATAACTTGTCGCCCAGTTCGGGTTGTCCCAGCAGGACGATGGACAGCAGTTTT 168882 Query 3830 TTAAATCCCATC-TCCAACTCGAAGAAGCGCTTCAGGTGCTTGAGCGTCGCGATCGGCAG 3888 ||||| ||||| |||| ||| |||||||| || |||||||| | |||| ||| ||||| Sbjct 168883 TTAAA-GCCATCTTCCAGCTCAAAGAAGCGTTTAAGGTGCTTTAAGGTCGGGATGGGCAG 168941 Query 3889 CGCGTGCGCTTCGTCGATCACGAGGCAATGCTGGTAGCCCGCCGCGTGGCTTTCCTTCAG 3948 || ||||| || ||||| || ||| ||| || || | ||| || || | Sbjct 168942 GCAATGGGCTTCTTCAATCACCAGTACATGGCTGTACCCGGCACGGCTGCTCTCTTTTAA 169001 Query 3949 GGCCTTGTGGAGCTGCGCGAAGCGGGCTTCCGGGCTGCTCTTGACCTTCTCCAGCGGGGC 4008 ||| ||||| ||||||||||| || || |||| || ||||| ||||| Sbjct 169002 TAGTCGGTGTAGCTGACGAAAGCGGGCTTCTGGTGAGCGTTTGAGTTTTTCCAGTGGGGC 169061 Query 4009 CACGG--CGGCCATGATTGCTTCCGCGA---TGTGCGTCGCCTTCAGCGTCTTGCCTTTC 4063 || || || || || ||||| |||| || ||| || ||||| |||||||| | Sbjct 169062 CAGGGTATGGACA--ATGGCTTCGGCGAGACTG-GCG--GCTTTCAGGGTCTTGCCCTGA 169116 Query 4064 TGGTCGTTGTCCTCCATCGCCAGCACGTACGGCTTGATGAC 4104 ||||||||||| ||||| ||||||||||| || || || || Sbjct 169117 TGGTCGTTGTCTTCCATTGCCAGCACGTAGGGTTTAATCAC 169157 Score = 158 bits (174), Expect = 3e-34 Identities = 553/846 (65%), Gaps = 27/846 (3%) Strand=Plus/Plus Query 5194 CCGTCCTCGCCAGTCAGGACCACCTGGGCGGCATCGTCACGCCACGGATTGCGCGTGATC 5253 |||||||| | ||| |||||||| || | ||| ||||| || || ||| ||| Sbjct 170187 CCGTCCTCATTAATCATTACCACCTGCGCTTCGCTGTCGCGCCAGGGGTTACGCACTATC 170246 Query 5254 ATCAGCTTCTCGCCGACCATGACGCCCGGCACCGACGACACGTCGTATTC-CTCGCCACG 5312 | | ||||| || ||||| || || | || |||||||| ||| || | Sbjct 170247 TGTACGGTGTCGCCCACGCAAACGCCGGGGACTTGCCGTACATCGTATTCACTCCCC-CT 170305 Query 5313 GAACGACACGCGCAGCTTCGGCGTGACCTTCCGACTTTCCGGCGAGGCA-ACCGCCAATT 5371 |||||||||||| || | | | ||||| || |||||||| || | ||||||| || Sbjct 170306 GAACGACACGCGAAGGTGGGTGCTAACCTTACGGTTTTCCGGC-AGACTCACCGCCAGTT 170364 Query 5372 CGCGGCACACATCGATCGA-CGGCGCCTTGATGAGTTGCTGGGCGGTAATGCGCATCCAT 5430 ||||||| || || | ||| ||| |||||||| | ||||| | ||| || || | ||| Sbjct 170365 CGCGGCATACGTCAA-CGAGCGGTGCCTTGATTAACTGCTGCGGGGTGATCCGTAACCAA 170423 Query 5431 GCCTCACTACGCGTCGCACCATGCCGGCTGTGCGTTTCAGTGGCGTTGAAGTGCATACGC 5490 || | || ||| || |||| ||| | ||| ||| | | ||||| Sbjct 170424 CAGTCGGTGCGGGTCATGCCGGTACGGCGATGCAGCGCGGTGCGGTTATACTTTTTACGC 170483 Query 5491 CAGCGTTTCGCAAGCGCGTTCAGCTCGTCGAGGCTGTTCACCGGCTGAAACTTGAGGCCC 5550 || | || |||||| || || | | | || || |||| ||||| Sbjct 170484 CATAACCCGACCAGGTGGTTCAGTTCATCAATATTATCGACTTGCACAAACCGCAGGCCG 170543 Query 5551 GGTTCGAACTTGCGCTCGATGAGGTTCCGCGCGTTCTCAACCTGTCCGGTGGCACGGGCG 5610 | ||| || | || ||||| | || ||||| || || || ||||| || |||||| Sbjct 170544 GATTCAAAATGGCACTCGAGAATGTCGCGCGCCTTTTCCACTGAGCCGGTAGCGCGGGCG 170603 Query 5611 TTGCCAACCTTGTGGACAATCAGCTCGATTCCGAGCGAGCGGCACAGGTTGCGCGTCATG 5670 |||| | || ||| | || || | || ||||| | |||||||| ||| || || Sbjct 170604 TTGCGGGCTTTATGGGCGATAAGTTGAATACCGAGGGTTTTACACAGGTTACGCATCGTG 170663 Query 5671 GACG---CCGTGTTCGCCGATCCGGCGTCGAGCATCA-GAATGCGTGGCACACCGTGCAG 5726 |||| || | || | |||| |||| | || | | ||| | ||||| || ||||| Sbjct 170664 GACGAGACCAGG---GCACAACCGGGGTCG-GTATAAAGGATGTGCGGCACGCCATGCAG 170719 Query 5727 CAGGTCGGCCCCGCCGCGCTCCTGCATAGCGTTGATGAGCG--TCGAGCAGAGGTTCTCG 5784 | ||||||||| ||||| || ||||| ||||| || | | ||| | | || |||| Sbjct 170720 TACGTCGGCCCCACCGCGTTCTTGCATGGCGTTAATCAACACATCG-GTAAAG-TTCTGC 170777 Query 5785 CCCGATTCCGCACCCATGACGTACTCGGTGTAAATCCAGTCGCTCGCGTGGTCGGAGATT 5844 ||| ||| | || | | |||||||| |||||||||| | || | |||||||| | Sbjct 170778 GCCGTTTCGCCGCCGAAGCGGTACTCGGCGTAAATCCAGCCACTGGTGTGGTCGGTCAGC 170837 Query 5845 TCGTAGCTCCACACACGATCGGCCGCGATCCGGGCGAGGTTCTTTGGCTTGTTCTTGTAG 5904 || | ||| || || || | | || || || || |||||||||||||||| Sbjct 170838 TCAAATGACCAGACGCGGTCATTGACTACTCGCGCCAGATTTTTTGGCTTGTTCTTGTTA 170897 Query 5905 AACTCAGCGTGATCCATCACGCGCAGGCCGTTCGCACGGGCA-TCGGC----TACCGG-- 5957 || || || | || ||||| |||||||||| | | || | | | || | ||| Sbjct 170898 AATTCCGCCTCATTCATCATGCGCAGGCCGCTATCGCGCGTAGTGAGCCCTTTGGCGGGA 170957 Query 5958 --CTTCAGGTAGTACAGCACGCACAGGCTCGCGTCGATCTGCCACACGTGATTCGGATGC 6015 |||||||| || ||||| ||||| || || | |||||| || ||||| || ||| Sbjct 170958 TTTTTCAGGTAATAGAGCACACACAGCGAGGCATCCAGCTGCCAGACATGATTGGGGTGC 171017 Query 6016 AGGCTT 6021 |||||| Sbjct 171018 AGGCTT 171023 Score = 156 bits (172), Expect = 1e-33 Identities = 397/588 (68%), Gaps = 17/588 (3%) Strand=Plus/Plus Query 17376 CTGGGATTGGGAGGAGCTTTGGCAGGACGCCCAGGCGAAGGCATTTACGGTTGCCAAGGT 17435 |||||||||| |||| | ||||| | ||||| || || ||||| |||||||| Sbjct 182667 CTGGGATTGGCAGGACGTCTGGCAAGCAGCCCATGCCCAGAGTGCGACGGTGGCCAAGGT 182726 Query 17436 CACGCGCCTGGACATCCTGCAGGACATTCGCAACGCGGTCGAAACC-GCAATCAGCGAAG 17494 || | ||||| || |||||||||||| | ||| | |||||| || | |||| Sbjct 182727 GACACAACTGGATATTCTGCAGGACATTTATCAGGCGCTGGAAACCCGCCCTGGCGGAAG 182786 Query 17495 GCAAGACGTTGCGATGGTTCACGAAAGAGCTGACGCCCGTACTGCAATCCAAGGGCTGGT 17554 |||| || | ||||| | || |||| || |||||||| |||| || |||| Sbjct 182787 GCAAAACCGGTCAGTGGTTTGCCCGGGAATTGACCCCGGTACTGCAGGCCAAAGGATGGT 182846 Query 17555 GGGGAAAGCAGGAGCACGTCGACCAGGATACCGGCGAAGTCAACCA-GGTTCAGCTCGGC 17613 |||| | ||||| | ||||| | | ||| | || | || ||| || | ||| Sbjct 182847 GGGGCGAACAGGATATCACCGACCCAGTGAGCGG-GCAGCCGGTCACGGTGCAATTAGGC 182905 Query 17614 AGCCCGTGGCGCCTGCAGACCATCTACCGAACGAACCTGCAGACGGCCTACATGGCGGGC 17673 |||||| ||| ||| ||||||| || || || || || || ||||| || || Sbjct 182906 AGCCCGCAGCGACTGGAGACCATTTATCGCACCAATTTGACTACCCTCTACAACGCCGGG 182965 Query 17674 CGCTACGCCGAGCAAATG---GCGAACGTCGACGATCGGCCGTACTGGATGTACGTGGCG 17730 |||| || || |||| | ||| || || | || || ||||||||||| |||||| Sbjct 182966 CGCTGGGCAGA---AATGCGGGAGAATGTTGAGGCCCGTCCCTACTGGATGTATGTGGCG 183022 Query 17731 ATCCTCGACAGCCGCACGCGCCCGAGCCATCGGGCAATGAACGGCAAGGTG-TTCCGTTA 17789 || | || | ||| || ||| ||||| | ||| || | ||| |||| ||||| | Sbjct 183023 ATACGAGATAACCGTACCCGCAAAAGCCACCTGGCGCTGCATGGCCGGGTGTTTCCGGCA 183082 Query 17790 CGACGATCCGTTCTGGCAGTCGTTCTACCCGCCGAACGGCTGGGGCTGCCGGTGCCGCGT 17849 || || ||| | |||| || |||| ||||| || |||||| |||| || ||| | || Sbjct 183083 -GATGACCCGGTATGGCGCGCGCTCTATCCGCCCAATGGCTGGCGCTGTCGCTGCAGTGT 183141 Query 17850 GGTGGCGCTGTC-GCACGACGAGATCATCGTGCGAGGCATCAAGGTCGAGGCGGCCGGCG 17908 | |||| ||||| | ||| || |||| | ||| || ||| ||| || || |||| | Sbjct 183142 GATGGCCCTGTCTGAACG-GGACATCAAAGCGCGTGGGCTCACGGTGGAAACGTCCGGTG 183200 Query 17909 ACCGCCTCGGCACGACGCT-CAAGCTGGTCAACGAG-AAGACCGGCGA 17954 |||| || || | || | |||| ||||| || | || |||||||| Sbjct 183201 ACCGTCTGCGCTGGTCGTTGCAAG-TGGTC-TCGCGCAAAACCGGCGA 183246 Score = 91.5 bits (100), Expect = 3e-14 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 31213 AGGCCATTACGGCCGAGATCGTGGCCGACTACGAGGCGCGCACTGGCAAGACGCTGTATC 31272 |||||||||| |||||| | | | ||| || ||| || || || || |||| | Sbjct 188404 AGGCCATTACCCGCGAGATGATTACGGCCTATGAAGCGGCCAGCGGTAAAACCCTGTGGC 188463 Query 31273 CGGCGCAGGTCGAACGCGTCCTGGTCGACATCATTGCCTACCGTGAAACCCTCGTACGCG 31332 | || |||| ||| || | || | ||| | | |||||||| |||||||| || | Sbjct 188464 CTGCACAGGCCGAGCGGTTATTGATTGACCTGTTCGCCTACCGGGAAACCCTGGTGCTGA 188523 Query 31333 TCGGCATCCAGGAGGCCGCGAAACAGAACCTTGTCGCGTTCGCCCGCGCTCCCATGATCG 31392 || |||||| ||| || | || ||||| || || || ||||| || || ||| | | Sbjct 188524 GCGCTATCCAGTCGGCGGCTGAGCAAAACCTGGTGGCCTTTGCCCGTGCCCCGATGCTGG 188583 Query 31393 ACTACCTTGGCGAGCTGGTCGGCGT 31417 |||| || | ||||||||||||||| Sbjct 188584 ACTATCTGGCCGAGCTGGTCGGCGT 188608 Score = 89.7 bits (98), Expect = 1e-13 Identities = 236/353 (67%), Gaps = 13/353 (4%) Strand=Plus/Plus Query 11979 GGCGCTGGCGTACCGCGCCGAGCTGACGCGCAACGCACGTGCCGTCTGGGGCATGGATGC 12038 ||||||||| ||||| || || |||| |||||||| ||| || ||||| | |||| Sbjct 175755 GGCGCTGGCATACCGGGCTGACCTGATACGCAACGCCCGTCTGGTGTGGGGACTCAATGC 175814 Query 12039 GCCAGTCTCGTCGTTCGCGGCGCAAATCCACCAGGAGAGCCGCTGGCGCGCGGACGCCGT 12098 ||| || || || || || || || |||| || ||| |||||| ||| | Sbjct 175815 GCCGGTGGCGGATTTTGCCGCCCAGATTGACCACGAAAGCGGCTGGCAGCCGGGTATCAC 175874 Query 12099 CAGCGTCGTTGGTGCGCGCGGGATGTCTCAATTCATGCCCTCGACCGTCGACTGGATCGC 12158 || | | || |||| || || || || ||||| | ||| || |||||| | Sbjct 175875 CAACAATATCGGCGCGCAGGGTCTGGGGCAGTTTATGCCTGCCACCACCGCCTGGATTG- 175933 Query 12159 GGGCGCCTATCCGGCCGAGCTGGGCGAGGC--GCAGCCGTTCAACCCGTCCTGGTCGATT 12216 ||||| || | | || |||| ||| || ||| |||| || |||| | Sbjct 175934 GGGCGTTAATGCCG--GAACTGG-CGACCAAAGC-GCCCCTCAATCCCGGCTGGAGTTTA 175989 Query 12217 CGTGCGCTCGTGCGGTACGA---CCGGCACCTCTGGGAGCGCATCACGGCGGCCGGTGCA 12273 |||||| | ||| | | ||| | ||| | ||| | ||| | ||| || ||| Sbjct 175990 CGTGCGGTGGTGAGTTTCGATAACTGGC---TGTGGCAACGCTTGTCGGTGGTGAATGCG 176046 Query 12274 TGCGAGCGCATGGCGATGACGCTGTCGGCCTATAACGGCGGCCTGGGCTGGGT 12326 || ||||||||||||||||| ||||||||||| ||||| |||||||||||||| Sbjct 176047 TGTGAGCGCATGGCGATGACCCTGTCGGCCTACAACGGTGGCCTGGGCTGGGT 176099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117470044238040