Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2 123 1e-23 seq41 120 2e-22 seq4 118 6e-22 seq6 116 2e-21 seq63 114 7e-21 >seq2 Length=21392610 Score = 123 bits (136), Expect = 1e-23 Identities = 88/101 (87%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| || |||| ||||||| | |||||||||| |||||||||| ||||||||| Sbjct 17395911 AAATACAGCTTTAAAAAAAAATTAG--TGGCCCATGAGGGGATCGAACCCGCGACCTTCG 17395968 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 17395969 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 17396009 Score = 120 bits (132), Expect = 2e-22 Identities = 81/91 (89%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||||| | |||||||||| |||||||||| ||||||||||||||||||| Sbjct 17391221 TTAAAAAAAAAT---AGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 17391165 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 17391164 ACGACGCTCTAACCAACTGAGCTAATGGGCC 17391134 Score = 118 bits (130), Expect = 6e-22 Identities = 81/91 (89%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||||| | |||||||||| |||||||||| ||||||||||||||||||| Sbjct 17394819 TTAAAAAAAAATTAG--TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 17394876 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 17394877 ACGACGCTCTAACCAACTGAGCTAATGGGCC 17394907 Score = 116 bits (128), Expect = 2e-21 Identities = 83/94 (88%), Gaps = 4/94 (4%) Strand=Plus/Plus Query 11440 TAAT-AAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 |||| ||||||| |||| |||||||||| |||||||||| |||||||||||||||| Sbjct 17634172 TAATGAAAAAATAAAATATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 17634231 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| ||||||| |||||||||||| Sbjct 17634232 AGCACGACGCTCTAACCAACTCAGCTAATGGGCC 17634265 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||| | | |||||||||| |||||||||| ||||||||||||||||||| Sbjct 17392294 TTAAAAAAAATT---AGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 17392238 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 17392237 ACGACGCTCTAACCAACTGAGCTAATGGGCC 17392207 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||||| | |||||||||| |||||||||| |||||||| |||||||||| Sbjct 17393937 TTAAAAAAAAATTAG--TGGCCCATGAGGGGATCGAACCCGCGACCTTCCCGTTATTAGC 17393994 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 17393995 ACGACGCTCTAACCAACTGAGCTAATGGGCC 17394025 >seq41 Length=5183572 Score = 120 bits (132), Expect = 2e-22 Identities = 79/87 (91%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || | ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 5168617 AAAAAATTAAGT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 5168559 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 5168558 GCTCTAACCAACTGAGCTAATGGGCCG 5168532 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| || ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 4337268 AAAAAAAAAAGAATATGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 4337209 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| ||||||||||||||| Sbjct 4337208 GACGCTCTAACCAGCTGAGCTAATGGGCC 4337180 >seq4 Length=17479078 Score = 118 bits (130), Expect = 6e-22 Identities = 81/91 (89%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 3378818 AAAAAATTTTAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 3378877 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC-GTCG 11533 ||||| |||||||||||||||||||| |||| Sbjct 3378878 GCTCTAACCAACTGAGCTAATGGGCCAGTCG 3378908 >seq6 Length=15957911 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 4272093 AAAAAATTTTAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 4272034 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 4272033 GCTCTAACCAACTGAGCTAATGGGCC 4272008 >seq63 Length=3029943 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 2864736 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 2864677 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 2864676 CTGAGCTAATGGGCC 2864662 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261486731932552