Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq157 141 2e-29 >seq157 Length=245904 Score = 141 bits (156), Expect = 2e-29 Identities = 371/552 (67%), Gaps = 17/552 (3%) Strand=Plus/Minus Query 26039 CCCTGGATAGGGGGAAAGCGCCGCCTCGCTGACCGCATCTTCCCGCT-TTTCCCACGCCA 26097 ||||||||||| || || || || || || | | || || |||| ||||| ||| | Sbjct 174983 CCCTGGATAGGCGGTAAACGGCGGCTGGCAAAACAGATTTTACCGCGCTTTCCGGCGC-A 174925 Query 26098 CTCCTGCTATGTCGAGCCTTTCGCAGGTGGGGCGGCACTGTTCTTCCTACGGCCGGTGCC 26157 ||||||| || ||||| || || | |||||| || ||||| | | | || Sbjct 174924 TACCTGCTACGTGGAGCCGTTTTGTGGCGCGGCGGCGCTCTTCTTTATGAAGTCAC--CC 174867 Query 26158 GGCGGATGTGGAAGTGCTCAACGACATCAACGGCGACCTGGTCAACCTGTACCGCGTCGT 26217 | | | ||| ||| | ||||| ||||||||||| |||||||| || || || || | Sbjct 174866 AGTA-AGGCGGAGGTGATTAACGATATCAACGGCGAGCTGGTCAATCTCTATCGGGTATT 174808 Query 26218 TCAGCATCATCTGGAAGAGTTCGTCCGCCAGTTCAAATGGGCGCT---CAGCTCTCGCCA 26274 | || |||||||||||||| | |||||||| ||||||||||| |||| | || | Sbjct 174807 AAAACACCATCTGGAAGAGTTTATGCGCCAGTTTAAATGGGCGCTGGTCAGC-CGGGCGA 174749 Query 26275 GGTCTTCAAGTGGCTGCAGGAGACCCGGCCGGAAACGCTGACCGACATCCAGCGCGCCGC 26334 || | ||| ||| | | || | | | || || | ||||| |||||||| || || Sbjct 174748 TGTAT-CAA-TGGTTAAACATCACGCCGACCGAGACCTTAACCGATATCCAGCGAGCAGC 174691 Query 26335 GCGCTTTTACTACCTGCAGCAGAGCGCGTTCGGCGGCCGGGTCGATGGCCAGAGCTACGG 26394 ||||| || |||||||| | |||||||||||| ||| | | || | | || Sbjct 174690 CCGCTTCTATTACCTGCAAAAACAGGCGTTCGGCGGCAAGGTGGCGGAGCACACTTTTGG 174631 Query 26395 AACCGCCACCACCTCACCGCCTGGGCTCAACCTGTTGCGCCTGGAAGAAACACTGTCGGC 26454 | |||||| | ||| | || |||||||| ||| |||||||| || ||| Sbjct 174630 TTTGACTACCACCACGGGGCCACGCCTGAACCTGTTACGCATGGAAGAAGAGCTATCGCT 174571 Query 26455 GGCTCACCTGCGGCTGAGCAAT-ACCTACATCGAGCACCTCAGCTGG--CAGGACTGCCT 26511 ||||| ||||| | | || ||| ||| || ||||| ||| ||| ||| | Sbjct 174570 CGCTCATCTGCGATT-ATCACGCACCACCATTGAACACCTGGATTGGGCCAG--CTGTAT 174514 Query 26512 CCGGCGCTATGATCGAGAGCACACCCTCTTTTATATGGACCCGCCGTACTGGGAGACGGA 26571 || ||||| || |||||| || ||||| ||||||||||| |||| || || Sbjct 174513 TGCCCGTTATGACCGTCCGCACACGCTGTTTTACTGCGACCCGCCGTATTGGGGAACAGA 174454 Query 26572 GGGCTATGGCGT 26583 ||||||||||| Sbjct 174453 AGGCTATGGCGT 174442 Score = 132 bits (146), Expect = 1e-26 Identities = 208/298 (70%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 7813 CCTGCAACTGTGCCTCCATCGGCAAGTGCAACGAGATCGTCATCATCTTCGCTGATCAGT 7872 || |||| ||||| || ||||||||||| || ||||| ||||||||||| | |||| Sbjct 173648 CCGGCAATGGTGCCGCCTTCGGCAAGTGCTACAAGATCTTCATCATCTTCAGTCATCAAC 173589 Query 7873 TCGAGTAGCTTCGCCTTCCCCAAAACGGACAACGTTGTCCGTTTTGACTCCAGTGCAGGA 7932 || | || || | || || ||||| || | | | || ||| ||||| | ||| Sbjct 173588 TCAAAGAGTTTTGTTTTGCCTAAAACCGAAATTGATTTCGTTTTCCCCTCCAAAGTAGGT 173529 Query 7933 GACAGGTATTTGAGCGCCGCCTGCATCATCCGGCGCGCTGCGCGCTCATGTATCCCCAAC 7992 || || ||||| || | |||| |||||| | | |||| | |||| | ||||| Sbjct 173528 GATAGATATTTAAGGGAAGCCTTCATCATTAGCTGTGCTGTTCTTTCATTAAGACCCAAT 173469 Query 7993 TGTTCAGTGACGATCTGAGTGAAGTCGCCGTGGGGCTCATGCTCTTTCAGCACGATCAGG 8052 || || || || | || || || || || ||||||| ||||| | | ||| || Sbjct 173468 CGTGTTGTTACAATATTGGTAAATTCACCATGTGGCTCATTTTCTTTGATAATGATGAGT 173409 Query 8053 CGCTTTCCGGCTTCCAGCATGGCTTCTGCCGACTGGGCCATGTAGAAGCGCGCCTCAT 8110 || || || ||||||||||||||||| || ||| ||||| ||||||||||| |||| Sbjct 173408 CGTTTACCTGCTTCCAGCATGGCTTCGGCACTCTGTGCCATATAGAAGCGCGCTTCAT 173351 Score = 129 bits (142), Expect = 1e-25 Identities = 287/423 (68%), Gaps = 17/423 (4%) Strand=Plus/Plus Query 6563 AGGATGCGTGGCACGCCGTGGAGCATGTCGGCTCCACCACGCTCTTGCATGGCCTCGATC 6622 |||||| | |||||||| || || | |||||| ||||| || ||||||||||| | ||| Sbjct 170697 AGGATGTGCGGCACGCCATGCAGTACGTCGGCCCCACCGCGTTCTTGCATGGCGTTAATC 170756 Query 6623 AGCACCGTGCAGAAGTTCT-CGCCACTCTCGGCGCCCATCACATAGCGAACGTAGATCCA 6681 | ||| | ||||||| |||| | ||| |||| | || |||| ||||| Sbjct 170757 AACACATCGGTAAAGTTCTGCGCC-GTTTCGCCGCCGAAGCGGTACTCGGCGTAAATCCA 170815 Query 6682 GCCGGTGTAGTGATCGGTGATCTCGTAGGACCACACACGGTCAGCGGCCACGCGATCCAG 6741 ||| || ||| ||||| | ||| | ||||| || |||||| | | || || |||| Sbjct 170816 GCCACTGGTGTGGTCGGTCAGCTCAAATGACCAGACGCGGTCATTGACTACTCGCGCCAG 170875 Query 6742 GTTCGCTGGCTTGTTCTTGTAGAACTCCTTGCGATCCATCACCTGTAGGCCGCTAGC-CT 6800 || |||||||||||||| || ||| || ||||| | ||||||||| | | Sbjct 170876 ATTTTTTGGCTTGTTCTTGTTAAATTCCGCCTCATTCATCATGCGCAGGCCGCTATCGCG 170935 Query 6801 TCTTGTTCGCCC-----CAGG---CTTCAGGTAGTAGAGGACGCAGAGGGACGCATCGAT 6852 | || |||| | || |||||||| ||||| || || || || ||||| | Sbjct 170936 CGTAGTGAGCCCTTTGGCGGGATTTTTCAGGTAATAGAGCACACACAGCGAGGCATCCAG 170995 Query 6853 CTGCCAGACGTGGTTCGGATGCAGGCTGCGCAGTTCGGTGACCGGCTCC---GGCGCCAA 6909 ||||||||| || || || |||||||| | | | || || | | |||||| Sbjct 170996 CTGCCAGACATGATTGGGGTGCAGGCTTTTTACCT-GTACACAGGGTGCAGGGGCGCC-- 171052 Query 6910 TAGCTGGGATGGATGCAGGCGGTAGCTGTGCAGCGCGCGGCTGATCGCGCTGATCGACAT 6969 || |||| || |||||||| || | || |||||| |||||||| || || ||||| Sbjct 171053 TAACTGGTTGGGGTGCAGGCGATAACGGTACAGCGCCCGGCTGATGGCATCGACCGACAG 171112 Query 6970 CGG 6972 ||| Sbjct 171113 CGG 171115 Score = 127 bits (140), Expect = 5e-25 Identities = 226/327 (69%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 7785 CATGCGCTCGATGTCGTCTAG-GTCGAGGCCTGCAACTGTGCCTCCATCGGCAAGTGCAA 7843 |||||| || | || || || ||| || || || | ||||| || ||||||||||| | Sbjct 171937 CATGCGATCAACATCATCGAGCGTCAAGCCC-GCGATGGTGCCGCCTTCGGCAAGTGCTA 171995 Query 7844 CGAGATCGTCATCATCTTCGCTGATCAGTTCGAGTAGCTTCGCCTTCCCCAAAACGGACA 7903 | ||||| ||||||||||| | |||| || | || || | || || ||||| || | Sbjct 171996 CAAGATCTTCATCATCTTCAGTCATCAACTCAAAGAGTTTTGTTTTGCCTAAAACCGAAA 172055 Query 7904 ACGTTGTCCGTTTTGACTCCAGTGCAGGAGACAGGTATTTGAGCGCCGCCTGCATCATCC 7963 | | || ||| ||||| | ||| || || ||||| || | |||| |||||| Sbjct 172056 TTGATTTCGTTTTCCCCTCCAAAGTAGGTGATAGATATTTAAGGGAAGCCTTCATCATTA 172115 Query 7964 GGCGCGCTGCGCGCTCATGTATCCCCAACTGTTCAGTGACGATCTGAGTGAAGTCGCCGT 8023 | | |||| | |||| | ||||| || || || || | || || || || | Sbjct 172116 GCTGTGCTGTTCTTTCATTAAGACCCAATCGTGTTGTTACAATATTGGTAAATTCACCAT 172175 Query 8024 GGGGCTCATGCTCTTTCAGCACGATCAGGCGCTTTCCGGCTTCCAGCATGGCTTCTGCCG 8083 | ||||||| ||||| | | ||| || || || || ||||||||||||||||| || Sbjct 172176 GTGGCTCATTTTCTTTGATAATGATGAGTCGTTTACCTGCTTCCAGCATGGCTTCGGCAC 172235 Query 8084 ACTGGGCCATGTAGAAGCGCGCCTCAT 8110 ||| ||||| || || |||||||||| Sbjct 172236 TCTGTGCCATATAAAAACGCGCCTCAT 172262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122881154148324