Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq16 196 8e-46 seq26 183 5e-42 seq97 174 2e-39 seq2 84.2 3e-12 >seq16 Length=9769746 Score = 196 bits (216), Expect = 8e-46 Identities = 204/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | | || || || |||||||| || ||||| ||||| ||||| Sbjct 9024927 CGCCAAGCGTCACAGGAAAGTACTCCGTGACAACATCCAGGGTATCACTAAGCCCGCTAT 9024986 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||||||||| |||||||||||| | ||||| || | || ||||||| Sbjct 9024987 CCGTCGTCTGGCTCGTCGTGGAGGAGTCAAGCGTATTTCTGGTCTGATTTACGAAGAGAC 9025046 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| || || ||||| | | | ||| ||| || ||| || || ||||| Sbjct 9025047 TCGTGGTGTGTTAAAAGTCTTCTTGGAAAACGTCATCAGGGACGCTGTCACTTACACCGA 9025106 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||||| | ||||| ||||| | ||||| | |||||||| |||||| | ||||| Sbjct 9025107 GCACGCTAAAAGGAAGACCGTCACTGCTATGGACGTAGTCTATGCCTTGAAAAGACAAGG 9025166 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| ||||| Sbjct 9025167 ACGTACCCTCTACGGTTTCGGAGGTTAA 9025194 Score = 196 bits (216), Expect = 8e-46 Identities = 204/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | | || || || |||||||| || ||||| ||||| ||||| Sbjct 9038619 CGCCAAGCGTCACAGGAAAGTACTCCGTGACAACATCCAGGGTATCACTAAGCCCGCTAT 9038678 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||||||||| |||||||||||| | ||||| || | || ||||||| Sbjct 9038679 CCGTCGTCTGGCTCGTCGTGGAGGAGTCAAGCGTATTTCTGGTCTGATTTACGAAGAGAC 9038738 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| || || ||||| | | | ||| ||| || ||| || ||||| || Sbjct 9038739 TCGTGGTGTGTTAAAAGTCTTCTTGGAAAACGTCATCAGGGACGCTGTCACTTATACTGA 9038798 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| | ||||| | |||||||| |||||| | ||||| Sbjct 9038799 GCACGCCAAGAGGAAGACCGTCACCGCTATGGACGTAGTCTATGCCTTGAAAAGACAAGG 9038858 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||| ||||| ||| ||||| Sbjct 9038859 ACGTACCCTTTACGGTTTCGGAGGTTAA 9038886 Score = 167 bits (184), Expect = 4e-37 Identities = 200/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| | | | |||| || || ||||||||||| ||||||||||| |||| Sbjct 665820 CGCCAAGCGTCACAGGA-AGGTCTTGCGTGACAACATCCAAGGTATCACCAAGCCCGCTA 665762 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || | |||||||| ||||||||| | || || ||| |||| || || | Sbjct 665761 TCCGTCGTCTCGCCAGGCGTGGTGGGGTCAAGCGTATTTCCGGTTTGATCTACGAGGAAA 665702 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| || ||||| | ||| | ||| ||| ||| || || || || |||| Sbjct 665701 CTCGTGGCGTATTGAAAGTTTTCTTGGAGAACGTGATCAGAGACGCAGTCACGTACACCG 665642 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||||||| | ||||| || || | ||||| ||||||| || |||||| | |||| Sbjct 665641 AACACGCTAAAAGGAAGACCGTTACGGCTATGGACGTCGTCTACGCTTTGAAAAGGCAAG 665582 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| | || ||||| ||| ||||| Sbjct 665581 GACGTACTCTCTACGGTTTCGGAGGTTAA 665553 Score = 165 bits (182), Expect = 1e-36 Identities = 202/273 (74%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| | | | |||| || || ||||||||||| ||||||||||| |||| Sbjct 658408 CGCCAAGCGTCACAGGA-AGGTCTTGCGTGACAACATCCAAGGTATCACCAAGCCCGCTA 658350 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || | || ||||| ||||||||| | || || ||| |||| || |||| Sbjct 658349 TCCGTCGTCTCGCCAGGCGAGGTGGTGTCAAGCGTATTTCCGGTTTGATCTACGAGGAGA 658290 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| || ||||| | ||| | ||| ||| ||| || || || || |||| Sbjct 658289 CTCGTGGCGTATTGAAAGTTTTCTTGGAGAACGTGATCAGAGACGCAGTCACGTACACCG 658230 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||||||| | || || || || | ||||| ||||||| || |||||| | |||| Sbjct 658229 AACACGCTAAAAGGAAAACCGTTACGGCTATGGACGTCGTCTACGCTTTGAAAAGGCAAG 658170 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 | |||| | || ||||| ||| ||||| ||| Sbjct 658169 GACGTACTCTCTACGGTTTCGGAGGTTAAACTT 658137 >seq26 Length=6747920 Score = 183 bits (202), Expect = 5e-42 Identities = 202/268 (75%), Gaps = 1/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||| | | | || || || |||||||| || ||||| ||||| ||||| Sbjct 4902272 CGCCAAGCGTCATAGGAAAGTACTCCGTGACAACATCCAGGGTATCACTAAGCCCGCTAT 4902213 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| |||||||| |||||||||||| ||||||| || |||| ||||||| Sbjct 4902212 CCGTCGTCTGGC-CGTCGTGGAGGAGTCAAGCGTATCTCTGGTCTGATCTACGAAGAGAC 4902154 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || || || | ||| | | | ||||||| || ||| || || ||||| Sbjct 4902153 CCGTGGAGTCTTAAAAGTATTCTTGGAAAACGTTATCAGGGACGCTGTCACTTACACCGA 4902094 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| ||||| | |||| | || ||||| |||||| | ||||| Sbjct 4902093 GCACGCTAAGAGGAAGACCGTCACTGCTGTGGACGTAGTGTATGCCTTGAAAAGACAAGG 4902034 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||| ||||| ||| ||||| Sbjct 4902033 ACGTACCCTTTACGGTTTCGGAGGTTAA 4902006 >seq97 Length=2153413 Score = 174 bits (192), Expect = 2e-39 Identities = 186/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || |||||||| || |||||||||||||| || | ||||| Sbjct 112169 CTCCGTGACAACATCCAGGGTATCACCAAACCCGCTATCCGTCGTCTCGCCAGACGTGGA 112110 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 |||||||||||| |||| || | |||| ||||||| ||||| ||| ||||| ||||| Sbjct 112109 GGAGTCAAGCGTATCTCAGGTCTCATCTACGAAGAGACTCGTGGTGTGTTGAAAGTCTTC 112050 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | ||||||| || ||| || || |||||||||||||| | ||||| ||| Sbjct 112049 TTGGAAAACGTTATCAGAGACGCTGTCACTTACACCGAGCACGCTAAGAGGAAGACCGTC 111990 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| | ||||| || |||||| | ||||| |||| | || ||||| ||| Sbjct 111989 ACTGCTATGGACGTAGTCTACGCCTTGAAAAGACAAGGACGTACACTGTACGGTTTCGGA 111930 Query 16694 AGTTAA 16699 ||||| Sbjct 111929 GGTTAA 111924 Score = 170 bits (188), Expect = 3e-38 Identities = 186/247 (75%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||||||||| || |||||||| || |||||||||||||| || | ||||| Sbjct 85632 TCTCCGTGATAACATCCAGGGTATCACCAAACCCGCTATCCGTCGTCTCGCCAGACGTGG 85691 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||||||||| |||| || | |||| ||||||| ||||| || ||||| |||| Sbjct 85692 AGGAGTCAAGCGTATCTCAGGTCTCATCTACGAAGAGACTCGTGGCGTGTTGAAAGTCTT 85751 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | | ||| ||| || ||| || || |||||||||||||| | ||||| || Sbjct 85752 CTTGGAAAACGTCATCAGAGACGCTGTCACTTACACCGAGCACGCTAAGAGGAAGACCGT 85811 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | ||||| | ||||| || |||||| | ||||| |||| | || ||||| || Sbjct 85812 CACTGCTATGGACGTAGTCTACGCCTTGAAAAGACAAGGACGTACACTGTACGGTTTCGG 85871 Query 16693 AAGTTAA 16699 | ||||| Sbjct 85872 AGGTTAA 85878 >seq2 Length=21392610 Score = 84.2 bits (92), Expect = 3e-12 Identities = 86/111 (77%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT-GG 16515 || || ||||||||||| ||||||||||| |||||||||||||| || | || ||| || Sbjct 18765207 CGTGACAACATCCAAGGTATCACCAAGCCCGCTATCCGTCGTCTCGCCAGGCGAGGTAGG 18765148 Query 16516 AGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAA 16566 |||||||| | || || || ||| || |||| ||||| || ||||| Sbjct 18765147 GATCAAGCGTATTTCCGGCATGATCTGCGAGGAGACTCGTGGCGTATTGAA 18765097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073918141586