Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq879 96.9 7e-16 seq77 93.3 8e-15 seq40 84.2 4e-12 >seq879 Length=1898 Score = 96.9 bits (106), Expect = 7e-16 Identities = 214/321 (67%), Gaps = 0/321 (0%) Strand=Plus/Plus Query 4381 TTACATGATCTACACAAAGATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGC 4440 ||||||||| ||| ||| | ||| | ||| || ||| | ||||||| || | Sbjct 1230 TTACATGATGAACATTGCGATTTTCCTCTTCTCCCTAAAAATTCTATACCACCAGGGGGG 1289 Query 4441 AAGCAACAAAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAA 4500 || || ||||||| ||| || | | |||||| || ||||||| ||||| || || Sbjct 1290 AAACATAAAAAACTTTTGACCACATTAAATGATAAAGATGATTATGTAATTCATTACAAG 1349 Query 4501 AATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAA 4560 | ||||| | | ||| |||||| |||||||||| || | | | || Sbjct 1350 TTACTAAAACAGGCTCTCTCTTTGGGTTTAAAGATTAAGAAAATCCATAAAATACTTAAG 1409 Query 4561 TTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTA 4620 || | ||||| |||| | || ||||||||||| |||| || |||||| Sbjct 1410 TTCAAACAATCCTGCTGGTTGAAGTCATATATCGAGTTAAATGTCGAGAAAAGAAAACGG 1469 Query 4621 GCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAG 4680 || || || || |||||| || | |||||| |||| ||||| ||||||||||| Sbjct 1470 GCCTCTAACGAATTTGAAAAATCATTCTTTAAATTGATGATAAATGCAATTTTTGGAAAG 1529 Query 4681 ACGATGGAGAATGTACGAAAA 4701 ||||||||||| | |||||| Sbjct 1530 TCGATGGAGAATATGCGAAAA 1550 >seq77 Length=2940474 Score = 93.3 bits (102), Expect = 8e-15 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 7264 TTGTATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCT 7323 ||| ||| |||||||| ||| ||||| || || || || | ||| ||| | |||| Sbjct 2777107 TTGAATGACATGTCCGAATTTACATGGTCTTCGTATATGCGTCTCATATTACATAAATCT 2777166 Query 7324 TGACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTA 7383 || ||| || | ||||| || ||||||| || |||| || || || | || ||| Sbjct 2777167 TGTTTGAAAAGTATAAGAAAATTGACATTATCCCTTATCAAATGTTTCGGGACTCTCGTA 2777226 Query 7384 TAAGTTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCT 7443 ||| ||||||| || || || || | | || || |||||||||||||| | | | Sbjct 2777227 TAACTTTGACATAGGTAAAATGAATCTATGCCGTTATGGCGACCCATGCAGAAGTACGAT 2777286 Query 7444 TTGATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATAT 7484 ||| | | || ||||| ||||| || | |||||| || || Sbjct 2777287 CTGACGCGGTCTTGTTTGTCACACGCTATATCGTCGAAAAT 2777327 >seq40 Length=4780559 Score = 84.2 bits (92), Expect = 4e-12 Identities = 149/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 7272 CATGTCCGTATTGACATGATCATCATA----AATATGCTTCAGATTCATTTCATCTTGAC 7327 ||| |||| ||||||||||| || || | || ||| ||||| || ||| | | Sbjct 651724 CATATCCGAGTTGACATGATCGTCGTAGACCCACCCGCCTCAAATTCAGCTCGTCTGGTC 651783 Query 7328 GGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAG 7387 |||| || | ||| | || ||||| ||||| | || || ||||| |||| ||||||| Sbjct 651784 GGAAAAGAATGAGGAGATTGGCATTTTCTCTGACTAGATGTTTGGGAATTCTTGTATAAC 651843 Query 7388 TTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGA 7447 | || | |||||||| |||| || | || || || ||||| || || | ||| | Sbjct 651844 TCTGGCTCAGATAGAAAATGTCGACGCCGTTATGACGCCCCATACAAAAGTACGCTCGCA 651903 Query 7448 TGTGATCCTGTTTTTCACAAGCAACATCGTCAAATAT 7484 | |||||||| ||||| |||| || || || || Sbjct 651904 CATTGTCCTGTTTGTCACAGGCAATGTCATCGAAAAT 651940 Score = 80.6 bits (88), Expect = 5e-11 Identities = 148/217 (68%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 7272 CATGTCCGTATTGACATGATCATCATAAA----TATGCTTCAGATTCATTTCATCTTGAC 7327 ||| |||| ||||||||||| || || | || ||| ||||| || ||| | | Sbjct 655162 CATATCCGAGTTGACATGATCGTCGTAGACCCCCCCGCCTCAAATTCAGCTCGTCTGGTC 655103 Query 7328 GGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAG 7387 |||| || | ||| | || ||||| ||||| | || || ||||| |||| ||||||| Sbjct 655102 GGAAAAGAATGAGGAGATTGGCATTTTCTCTGACTAGATGTTTGGGAATTCTTGTATAAC 655043 Query 7388 TTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGA 7447 | || | |||||||| |||| || | || || || ||||| || || | ||| | Sbjct 655042 TCTGGCTCAGATAGAAAATGTCGACGCCGTTATGCCGTCCCATACAAAAGTACGCTCGCA 654983 Query 7448 TGTGATCCTGTTTTTCACAAGCAACATCGTCAAATAT 7484 | | |||||| ||||| |||| || || || || Sbjct 654982 CATTGTACTGTTTGTCACAGGCAATGTCATCGAAAAT 654946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97972768848708