Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 1e-14 >seq13 Length=9188118 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||||||||| ||||| | | || |||||||| |||||| | | ||||| || ||| Sbjct 3473887 TTAAAAATCTGCATCAAGCGTAAAGACATTATCCTCTTTTCTAGCCATAACACCGGCTTT 3473946 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||| || || | |||| | || |||||||| |||||||||||||| | || || ||| Sbjct 3473947 TTGGTATTCCCCAACTTTCTTCTCGAAAAAGTTTGTCTTTCCTTCGAGAGAGATGTGTTC 3474006 Query 21247 CATAAAATCAAATGGATTTTCAGATTT 21273 |||||| || || || || |||| || Sbjct 3474007 CATAAAGTCGAACGGGTTCACAGAATT 3474033 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 ||||||||| ||||| ||||||||||| || |||||||| ||||| ||||| || || || Sbjct 3474742 ATACATTTCGGAATGGATATTTTCTATTGCGATCTGAAAACCGTAGAAACACCTCGCTTC 3474801 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAG-TTTTCATTTACTATTCCATCAC 21887 | ||| || || | |||| |||| | |||| ||||||||||| || || || Sbjct 3474802 AGTCACTTGGACTTCTTGAGAAAACCGTT-CGACAAGATTTTCATTTACAATCCCGTCCG 3474860 Query 21888 TGGCGGCAAAAAATGCCAA 21906 || || |||||||| || Sbjct 3474861 ATGCAGCGAAAAATGCTAA 3474879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531891478438480