Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq13 116 5e-21 seq105 113 6e-20 >seq13 Length=9188118 Score = 116 bits (128), Expect = 5e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 ||||||||||| | ||| ||||||||| ||||| || ||||| || || |||||||| Sbjct 3474722 TAAGTATCGATTAGAAGTGAATACATTTCGGAATGGATATTTTCTATTGCGATCTGAAAA 3474781 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTT 33693 ||||||||||| || || || || | || |||||| | |||| ||||| | | |||| Sbjct 3474782 CCGTAGAAACACCTCGCTTCAGTCACTTGGACTTCTTGAGAAAACCGTTCGACAAGATTT 3474841 Query 33694 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 33737 ||||| || || ||||| || || ||||| || || ||||| Sbjct 3474842 TCATTTACAATCCCGTCCGATGCAGCGAAAAATGCTAAAACATG 3474885 >seq105 Length=1502237 Score = 113 bits (124), Expect = 6e-20 Identities = 139/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||| |||||||||||||| | ||||| | |||||||| ||| |||| |||||||| | Sbjct 287927 TACCTGAAATTCTCCAGATAGCACTCTTCTTGTGTAAATGTTAGTGGTGTACGGTTCAAA 287868 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 || |||||||| || | ||| ||||| || ||||| || ||||| || || | ||| | Sbjct 287867 AGATTCATTATTGCCGAGAATCTGAGCTGTAGATGCTGTAGGCATTGGAGCGATCAAAAG 287808 Query 62456 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62513 ||| |||| ||| ||| | || ||||| ||||| |||| | ||| | ||| ||| Sbjct 287807 GGAATTCCTAACACC--ATGCTTTGCTATTTTCTCTTTGAGAGCATTCCAGTCCCATAGA 287750 Query 62514 TCCGACGG 62521 || || || Sbjct 287749 TCAGATGG 287742 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 || || || |||||||| | |||| ||| || |||||| ||||||| |||||||| | | Sbjct 285099 TTATTGCCACCCTGATCCACATATCGAGCAGTATTATTAAAAACTCTTAACATTGGCACA 285040 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTAC-T 63484 | ||||| || || ||||| || || | || | || || | || |||||| | | Sbjct 285039 AGTCCGTTAGAGATGCCATTTGTTCCAGCAATTAAACTGCCTTTTGCCCGAATACAATGT 284980 Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 | ||| | || || || || || |||| || || || || | ||||||| || || Sbjct 284979 ACGTGA-ATTCCAATACCACCAGCAGTTTTTGAAATCAACGCAGACTGTTTTAATGTATC 284921 Query 63545 ATAGATACCCTCTATGCTATCATC 63568 | ||||||| || ||||||||||| Sbjct 284920 AAAGATACCTTCGATGCTATCATC 284897 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||| | || ||||| | || || || || || || || || |||||||||||||||| Sbjct 284751 GTTGCAGCGTTAAAAAGTGTGGGGGAGGCATGTGTGAAATATCCTTCAGAAAGTAGATTG 284692 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || ||||| || | ||| || || | ||||||||| | ||||| | ||| ||| Sbjct 284691 TAAGTTTCAATTGCAGCGTCAATGTCTTCTCCATGAATTCCAATCGCGACTCTCATCAAC 284632 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGtt 63760 || ||||||||||| || || || ||||| Sbjct 284631 ATATGCTGAGGTCTCTCGACAATTTTGTT 284603 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 ||||||| ||||| ||||| |||||||| || |||||||| || || | || || | Sbjct 286253 CATATGTCTCGTACGGTCCAAGTTTCTCAGCAAGATCACAACTTGCTTCAAGCGCGCCAT 286194 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||| || ||||| |||| || || | ||| || | | ||| || || || | Sbjct 286193 AATAAATTGTCTCGAATATCTGTTTGTTCAATGTTTGGGCCTGAATGCTCTCGAACGGGT 286134 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | | | || || | || ||||| |||||||||||||| || ||||| | ||| | Sbjct 286133 ACCTCATCAATATGAAAGTATCGGCTAAACCTTGAACACCAATTCCAATAGGACGATGCC 286074 Query 62755 TCTTATTAGA 62764 || | || || Sbjct 286073 TCATGTTCGA 286064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622936282850320