Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq105 159 9e-34 seq89 116 1e-20 seq3 104 6e-17 seq13 86.0 2e-11 >seq105 Length=1502237 Score = 159 bits (176), Expect = 9e-34 Identities = 303/441 (69%), Gaps = 4/441 (1%) Strand=Plus/Plus Query 363837 AGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCT 363896 ||| || ||||| || || ||||||||| ||||| ||||||||||||||||| || | Sbjct 285201 AGGTGCTTTTGCAATTTACCTCGAGCCTTGGCATGCTGATATTTTTGAGTTTCTCGATTT 285260 Query 363897 CCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 ||||| || ||||| || || | || || |||||||| || |||||||||||| | Sbjct 285261 GAAAAAAAATACTGGAAAGGAAGAGGTACGGGCCCGTGATCTTTTTTATGCACTTTGGAT 285320 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACA 364016 | |||| || ||| | | || || | |||||| ||| || | ||||| || Sbjct 285321 TCCTGATTTGTTCATGGAAAGGGTTGAATCTAATAAGAAATGGAGTCTTATGTGCCCGCA 285380 Query 364017 CGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076 ||||||| |||||| || || |||||| | ||| || | ||| || | ||| || Sbjct 285381 TAAATGTCCTGGTCTTCATGACGTCTGGGGTAAAAACTTTGAGGATCTGTATGTAAAATA 285440 Query 364077 TGAATCGGAGGGAAAGGCTCGTAAGAC-AATTCCCGCACAGAAGC-TATGGTTTGCCATC 364134 |||| || || | || ||| |||| |||| |||| | | ||| ||| || Sbjct 285441 TGAAAACGAAGG-TCGTTATATACGACAAATTGACGCA-AGAAACTTGTGGAATGCTATA 285498 Query 364135 ATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGC 364194 || || || ||| | || || || || || ||| ||||||||||| |||||||| | Sbjct 285499 ATTGAGTCTCAGGTGGAAACCGGTGTTCCTTACATGCTGTACAAAGATGCGTGCAACAGA 285558 Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATT 364254 || |||||||| ||| | | || || ||| | ||||| || ||||| || || | Sbjct 285559 AAATCCAACCAACAGAATTTGGGCACCATTAAATGTAGCAATCTTTGTACAGAAATAGTA 285618 Query 364255 GAATACACCGCTCCCGACGAG 364275 ||||| || || | || ||| Sbjct 285619 GAATATACATCTGCAGATGAG 285639 >seq89 Length=3091062 Score = 116 bits (128), Expect = 1e-20 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 111579 GATCAATTACAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATT 111638 ||||| ||| | | || ||| |||||||||| || ||||| | ||||||| | ||| Sbjct 2013175 GATCAGTTAAAAACAGTAATTAATCAAATTAAAAATAACCCTAATTCTCGTAGACATATC 2013234 Query 111639 ATGAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATG 111698 || ||| ||||| |||| || | | || | |||||| | |||||||| ||| ||| Sbjct 2013235 ATTTCTGCGTGGAATCCAACTGAAATTGATACAATGGCTTTACCACCATGCCATACGATG 2013294 Query 111699 TGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGAT 111758 | ||| |||||||| || || || | | |||||| | |||||| || ||||||| Sbjct 2013295 TTCCAATTTTATGTTCAAGATGGAAAATTGAGTTGCCAATTATATCAGAGAAGTGCTGAT 2013354 Query 111759 ATTGGTCTT-GGTGTTCCGTTTAATATTGCAAGTTA 111793 || |||| ||||| || ||||| ||||||||||| Sbjct 2013355 ATAT-TCTTAGGTGTGCCATTTAACATTGCAAGTTA 2013389 >seq3 Length=17889087 Score = 104 bits (114), Expect = 6e-17 Identities = 240/355 (68%), Gaps = 14/355 (4%) Strand=Plus/Plus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 ||| ||||| || || ||||| |||||||| ||| | || || || || || || ||| Sbjct 15711935 AGGGGATCTTGGGCCTGTTTATGGATTTCAGTGGAGGCATTTCGGAGCCGATTATAAAGA 15711994 Query 111548 CATGCACGACTCATATGATTCA---CAGGGAACTGATCAATTACAGAATGTCATTGATCA 111604 ||||||| || || | || || || || |||||| | ||| || | Sbjct 15711995 CATGCACA---CAGATTACACAGGACAAGGTGTCGACCAATTAATGGCTGTAATAAACAC 15712051 Query 111605 AATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATT 111664 ||||| | ||| || | | || | || |||||| | || ||||| || | |||||| Sbjct 15712052 TATTAAAACCAATCCCAATGACCGAAGGATGATTATGTGCGCCTGGAATCCTA-TGCATT 15712110 Query 111665 G-GAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGT---ACACGACG 111720 || || ||||| || || || || ||| | || || |||||||| | | | || Sbjct 15712111 TAGACAAGATGGCTCTACCCCCTTGCCATTGTTTGGTACAATTTTATGTTGCAAATGGCG 15712170 Query 111721 GGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTA 111780 || | || ||||| |||||||| |||| || || || || | || ||||| |||| Sbjct 15712171 A-AT--TATCTTGCCAGCTGTATCAGAGATCGGCAGACATGGGCTTAGGAGTTCCATTTA 15712227 Query 111781 ATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAA 111835 | |||||||| || || || | || | | | || |||||| ||||||||||||| Sbjct 15712228 ACATTGCAAGCTATGCTCTTTTAACATACATGATTGCTCATGTTACAAATCTCAA 15712282 >seq13 Length=9188118 Score = 86.0 bits (94), Expect = 2e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 22855 GTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAA 22914 || || || || || | ||||||| || || || ||||||||||| || || ||||| Sbjct 3474027 GTGAACCCGTTCGACTTTATGGAACACATCTCTCTCGAAGGAAAGACAAACTTTTTCGAG 3473968 Query 22915 AAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951 || | |||||| |||||||||||||| |||||||||| Sbjct 3473967 AAGAAAGTTGGGGAATACCAAAAAGCCGGTGTTATGG 3473931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303330187696364