Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq46 96.9 3e-15 seq105 89.7 5e-13 >seq46 Length=4728336 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | ||| | || ||| | || | ||| || || ||||||||||| || || Sbjct 1481512 GCCTCCTCTCAATCTCAACACAAGGTGGAGGGTTGATTCTTTTTGAATGTTATAGTCAGA 1481571 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || || || ||||| || || ||| | || || | |||||| || || || Sbjct 1481572 AAGGGTTCGACCATCTTCAAGCTGTTTTCCAGCGAAAATCAACCTCTGCTGATCTGGGGG 1481631 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||| || ||| || ||||| | || | ||| |||| | ||| | Sbjct 1481632 GATTCCTTCTTTATCTTGGATCTTTGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTAC 1481691 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || ||||||| ||| |||||||| |||||||| Sbjct 1481692 TTCAAGTGTAATAGTCTTGCCGGTTAAAGTCTTTACGAAGATCTGCAT 1481739 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || ||||| | ||||| |||||||||||||| ||||| | || ||| ||| Sbjct 1481072 AGAACCAAATGCAAAGTCGATTCCTTTTGAATGTTATAATCTGAGAGCGTACGCCCATCC 1481131 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || || || || || || | || | | ||||||||| || || || ||||||||||| Sbjct 1481132 TCGAGTTGTTTTCCGGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCT 1481191 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||||| |||| | || | ||| || | | ||||| || | || | ||| Sbjct 1481192 TGTATTTTAGCTTTGACATTTTCAATAGTGTCTGATGGCTCGACTTCTAAAGTTATGGTC 1481251 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || |||||||||||||| || ||||| ||||| Sbjct 1481252 TTTCCGGTTAGAGTTTTAACAAAAATTTGCAT 1481283 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| || || || || | ||||| |||||||||||||| ||||| Sbjct 1481741 CCACCTCTGAGACGGAGGACCAAGTGCAGAGTCGATTCCTTTTGAATGTTATAATCCGAG 1481800 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||||| || |||||||| ||| | || | | || ||||| || ||| Sbjct 1481801 AGAGTTCTACCATCCTCAAGTTGCTTGCCAGCGAAAATCAGCCTTTGTTGGTCTGGCGGG 1481860 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||| | | ||| | ||||| | | ||| | Sbjct 1481861 ATACCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATTGTATCTGAAGGCTCAACT 1481920 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| ||||| | |||||| || || |||||||| Sbjct 1481921 TCCAATGTGATGGTTTTTCCGGTCAAAGTTTTCACAAAGATCTGCAT 1481967 >seq105 Length=1502237 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 145670 TATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTA 145729 |||| ||| || || | || | |||||||||||| ||||| |||| ||| || || || Sbjct 285623 TATTCTACTATTTCTGTACAAAGATTGCTACATTTAATGGTGCCCAAATTCTGTTGGTTG 285564 Query 145730 CTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTC 145789 ||| ||||||||||| || ||||| |||||||| || | || || |||||||| | | Sbjct 285563 GATTTTCTGTTGCACGCATCTTTGTACAGCATGTAAGGAACACCGGTTTCCACCTGAGAC 285504 Query 145790 TC 145791 || Sbjct 285503 TC 285502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472004527975680