Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq46 145 7e-30 >seq46 Length=4728336 Score = 145 bits (160), Expect = 7e-30 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 || |||||||||| || ||||| || ||||||||||| ||| |||||||| | ||||| | Sbjct 1481975 ACAGAACAATGCAGATCTTTGTGAAAACTTTGACCGGAAAAACCATCACATTGGAAGTTG 1481916 Query 25051 AGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || | || || || || ||| ||||| |||||| ||||||||||| || || | Sbjct 1481915 AGCCTTCAGATACAATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGTATCCCGC 1481856 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | |||||||| || | ||||| || ||||| ||| | || |||| | | ||| | | Sbjct 1481855 CAGACCAACAAAGGCTGATTTTCGCTGGCAAGCAACTTGAGGATGGTAGAACTCTCTCGG 1481796 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| || |||||||| ||||| || || || || || || | || ||||| || Sbjct 1481795 ATTATAACATTCAAAAGGAATCGACTCTGCACTTGGTCCTCCGTCTCAGAGGTGG 1481741 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| |||||||||||||| || ||| ||||||| | || || || | || Sbjct 1481055 ATGCAAATATTCGTAAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTCGAACCATCC 1480996 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| | || | ||| || |||||||| || ||||| || || Sbjct 1480995 GACACAATTGAAAATGTTAAGGCCAAGATTCAG-GATAAAGAAGGCATCCCACCAGATCA 1480937 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || || || || ||||| || ||||||| |||||| | || ||||| Sbjct 1480936 ACAGAGGTTAATCTTCGCTGGAAAACAGTTGGAAGATGGACGCACTCTTTCGGACTACAA 1480877 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||||||| || || | || | ||||| |||||||| Sbjct 1480876 TATTCAAAAAGAATCCACCCTTCACCTCGTTTTGAGGCTGAGAGGAGG 1480829 Score = 141 bits (156), Expect = 8e-29 Identities = 172/232 (74%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || || || || ||| | ||||| | ||||| || | || Sbjct 1480600 AATGCAAATCTTTGTGAAAACATTAACAGGGAAAACAATCACCTTGGAAGTCGAACCTTC 1480541 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||| || || || || | |||| |||| ||| ||||||||||| || || || | Sbjct 1480540 TGATACAATTGAAAACGTAA---AAGCTAAAATTCAA-GACAAAGAAGGTATCCCTCCAG 1480485 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||| | | |||||||||||||||||| | ||||||| ||| || | |||| Sbjct 1480484 ATCAGCAGAGATTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGTACATTATCAGATT 1480425 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| |||||||||||||| || || | || ||||||| |||||||| Sbjct 1480424 ACAATATCCAAAAAGAATCCACACTCCACCTTGTTTTAAGGCTCAGAGGAGG 1480373 Score = 136 bits (150), Expect = 3e-27 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | ||||| || |||| || | ||||| ||| | || Sbjct 1481283 ATGCAAATTTTTGTTAAAACTCTAACCGGAAAGACCATAACTTTAGAAGTCGAGCCATCA 1481224 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| |||| |||| || ||||||||||| ||||| || || Sbjct 1481223 GACACTATTGAAAATGTCA---AAGCTAAAATACAA-GACAAAGAAGGCATTCCCCCAGA 1481168 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | ||||||||||| |||||| | || |||| || || | ||||| Sbjct 1481167 CCAGCAGAGGCTGATTTTTGCCGGAAAACAACTCGAGGATGGGCGTACGCTCTCAGATTA 1481108 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||| ||||| || | ||||| || || ||| | |||||||| Sbjct 1481107 TAACATTCAAAAGGAATCGACTTTGCATTTGGTTCTCAGGTTGAGAGGAGG 1481057 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| ||||||| ||||||| ||| | || Sbjct 1480143 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACTCTCGAAGTCGAGCCATCA 1480084 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || || | |||| |||| || || |||||||| ||||| || || Sbjct 1480083 GATACCATTGAAAACGTAA---AAGCCAAAATCCAA-GATAAAGAAGGAATTCCCCCAGA 1480028 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | || ||||||||||| ||| | ||||||| ||| || | |||||| Sbjct 1480027 TCAGCAAAGGCTCATCTTTGCCGGCAAGCAACTGGAAGATGGTCGTACACTCTCCGATTA 1479968 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| |||||||| || || || | || || || || ||||||| Sbjct 1479967 CAATATTCAGAAAGAATCTACTCTCCACCTCGTACTGAGACTCCGAGGAGG 1479917 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||||| || || || | ||||| ||||||| ||| | ||| Sbjct 1480371 ATGCAAATCTTTGTGAAAACTTTAACAGGAAAGACAATCACCCTCGAAGTCGAGCCATCT 1480312 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| || | ||| || || |||||||| || || || Sbjct 1480311 GACACCATTGATAATGTCA---AAGCTAAGATTCAG-GATAAGGAAGGGATCCCTCCAGA 1480256 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | |||||||| || || ||||| ||||| | ||||| | ||||| Sbjct 1480255 CCAGCAGAGGTTAATTTTTGCTGGAAAGCAATTGGAAGACGGACGCACACTTTCGGATTA 1480196 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || ||||||||||| || ||| | || | ||||| ||||| || Sbjct 1480195 CAACATCCAGAAAGAATCCACTCTTCATCTTGTCTTGAGGCTCAGAGGCGG 1480145 Score = 131 bits (144), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||||| || || || | ||||| | ||||| || | || Sbjct 1480827 ATGCAAATCTTTGTGAAAACTTTAACAGGAAAGACGATCACTCTTGAAGTCGAACCATCG 1480768 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| |||| ||| || |||||||| || ||||| || Sbjct 1480767 GATACGATTGAAAATGTCA---AAGCGAAAATTCAG-GATAAAGAAGGTATCCCACCAGA 1480712 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || |||||||| || || |||||||||| |||||| | ||||| Sbjct 1480711 CCAGCAGAGGCTCATCTTTGCCGGTAAGCAGTTAGAAGATGGGCGCACTCTTTCTGATTA 1480652 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || ||||||||||| || ||| | || |||||||| | || |||| Sbjct 1480651 TAACATCCAGAAAGAATCCACTCTTCATCTTGTCCTAAGGCTCCGTGGTGGAA 1480599 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||||||||| ||||| || | || ||| | ||||| ||| | || Sbjct 1481739 ATGCAGATCTTCGTAAAGACTTTAACCGGCAAGACTATTACACTTGAAGTAGAGCCTTCC 1481680 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| ||| ||| || |||||||| || || || || || Sbjct 1481679 GACACTATTGAAAATGTCAAGGCAAAGATCCAAGATAAAGAAGGAATCCCCCCAGATCAG 1481620 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | ||||| || || ||||| | ||||||| ||| || | || || || Sbjct 1481619 CAGAGGTTGATTTTCGCTGGAAAACAGCTTGAAGATGGTCGAACCCTTTCTGACTATAAC 1481560 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||| || || || | ||| | || | |||||||| Sbjct 1481559 ATTCAAAAAGAATCAACCCTCCACCTTGTGTTGAGATTGAGAGGAGG 1481513 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || |||||| | || || || | ||||| | ||||| ||| | || Sbjct 1570028 AATGCAGATCTTCGTGAAGACTCTTACTGGAAAGACAATCACTTTGGAAGTTGAGCCATC 1570087 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || || || |||| |||| || ||||| ||||| ||||| || || Sbjct 1570088 GGACACCATTGA--CAATGTCAAAGCTAAAATCCAA-GACAAGGAAGGAATTCCCCCAGA 1570144 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || || ||||| || || | || |||| ||| || | || || Sbjct 1570145 CCAGCAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGTACGCTTTCTGACTA 1570204 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || |||||||||||||| || || | || | ||| | |||||||| Sbjct 1570205 CAACATCCAAAAAGAATCCACCCTCCACCTTGTTTTGAGGTTGAGAGGAGG 1570255 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | ||||| || | || Sbjct 1570257 ATGCAGATCTTCGTGAAGACCCTTACTGGAAAGACCATCACCTTGGAAGTTGAACCATCC 1570316 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 1570317 GATACCATTGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAG 1570376 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||| || || || | || |||| || ||| | || ||||| Sbjct 1570377 CAGAGATTGATCTTTGCAGGAAAGCAGCTCGAGGATGGACGTACTCTTTCTGACTACAAC 1570436 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||| || || || || ||||| ||||| |||||||| Sbjct 1570437 ATCCAAAAAGAATCAACCCTCCACTTGGTGCTTAGGCTTAGAGGAGG 1570483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433320595778630