Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq13 165 9e-36 seq95 129 7e-25 seq43 129 7e-25 seq1 113 5e-20 >seq13 Length=9188118 Score = 165 bits (182), Expect = 9e-36 Identities = 167/215 (78%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 93356 TCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCA 93415 || || ||||| |||||||||| || ||||||||||| ||||||| ||| || ||||| Sbjct 3474713 TCACGGATGTAAGTATCGATTAGAAGTGAATACATTTCGGAATGGATATTTTCTATTGCG 3474772 Query 93416 ATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCT 93475 || || || ||||||||||| || ||||| || | || |||||||||||||| | || Sbjct 3474773 ATCTGAAAACCGTAGAAACACCTCGCTTCAGTCACTTGGACTTCTTGAGAAAACCGTTCG 3474832 Query 93476 ACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATA 93535 || ||||||||||| || || || || ||||| || ||||| || || | |||| || | Sbjct 3474833 ACAAGATTTTCATTTACAATCCCGTCCGATGCAGCGAAAAATGCTAAAACATGCGATAAA 3474892 Query 93536 AAATGTTTCTCATCA-TCTTTAAGCTTATCCCAAT 93569 || || |||||||| ||| ||| || ||||||| Sbjct 3474893 AAGTGCCTCTCATCAGGCTTCAAG-TTCTCCCAAT 3474926 Score = 109 bits (120), Expect = 6e-19 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 |||||||||||||||||||| || ||||||||||||||||| || ||||||||||| | Sbjct 3474994 TTTGAAAGATCGACTTCTTCTACTGTCCAAAACGATGCTTCGGCCTTTTTGTACATTCTC 3475053 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 |||||||| || || | || ||||| |||||||| Sbjct 3475054 CATATGTCGTGGTACTCGATCGGAAACATGACAAA 3475088 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/118 (79%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 92741 ATTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCAC 92800 |||| ||||||||||| || ||||| ||||| || | |||| | ||||||||| Sbjct 3473886 ATTAAAAATCTGCATCAAGCGTAAAGACATTATCCTCTT--TTCT-AGCCATAACACCGG 3473942 Query 92801 ATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATAT 92858 ||||||||||||||||||||| || || || || |||||||||||||| | ||| || Sbjct 3473943 CTTTTTGGTATTCCCCAACTTTCTTCTCGAAAAAGTTTGTCTTTCCTTCGAGAGAGAT 3474000 >seq95 Length=1879687 Score = 129 bits (142), Expect = 7e-25 Identities = 82/88 (93%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TCGGGAGCG 126323 |||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 455593 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGATGGGAGCG 455652 Query 126324 TGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||||||||||||||||| ||| Sbjct 455653 TGGGTTCGAACCCCACACCTGACACATT 455680 >seq43 Length=4351604 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||| Sbjct 443267 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGATTGGGAGC 443326 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 443327 GTGGGTTCGAACCCCACACCTGACA 443351 >seq1 Length=33720124 Score = 113 bits (124), Expect = 5e-20 Identities = 85/98 (87%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTCGGGAGCG 126323 || ||||||||||||| ||||| |||||||||||||||| |||||||| | ||||||| Sbjct 28567110 AGCCAGGTTGGCCGAGCGGTCTGAGGCGCCAGATTTAAGCTCTGGTTCTCGATGGGAGCG 28567169 Query 126324 TGGGTTCGAACCCCACACCTGACA---AATTATTATTG 126358 |||||||||||||||||||||||| |||| || ||| Sbjct 28567170 TGGGTTCGAACCCCACACCTGACACAGAATTTTTTTTG 28567207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556851041014480