Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_008689.1 Length=44857 Score E Sequences producing significant alignments: (Bits) Value seq89 448 1e-121 >seq89 Length=3091062 Score = 448 bits (496), Expect = 1e-121 Identities = 521/689 (76%), Gaps = 29/689 (4%) Strand=Plus/Plus Query 39969 TGAGTCTGGGACATAAATCCCTaaaaaaaCAGCAGTAAGATATTTTCTAATTGAAAATTA 40028 |||| ||||||||||||||| | ||||| |||| | |||| ||| |||| || | | Sbjct 2310803 TGAGGTTGGGACATAAATCCC-AGAAAAATAGCACTCAGATGATTT--AATTCAAT-TCA 2310858 Query 40029 TCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTT-CGCTTTCCTAGG 40087 ||| | |||| ||| | ||| | |||||||||||||| | ||||| ||||||| || Sbjct 2310859 TCTGAGTGCT--TCTTT-TTTGTTCAATACTTCGTATT-ATTGGCTCGCGCTTTCTTAAA 2310914 Query 40088 GTGCCGTCTCAGCCT-TGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAAT 40146 | | | |||| | | |||||| || ||| | ||||| ||||||||| | ||| Sbjct 2310915 GGACAGCTTCAGATTGTAGTCTTCTGCTTATCCTGTTACCTCAAGAGTCTCGCAA--AAT 2310972 Query 40147 ACTACGTATTAACATGTAATTTTACTTTGAAATACTTTaaaaaaaTAAGACACTTTCGTA 40206 | || || | |||||||||||| || ||||| || ||| ||||| | || || | Sbjct 2310973 ATGTCGCATACATATGTAATTTTACATTAAAATA--TTGAAAGGATAAGGTAGTTACGAA 2311030 Query 40207 TAATTTAATAAATACCACTAAACTAAATTAACGAGGTGCCTTATGTATAAAAATTATAAC 40266 ||||||||||||||| | ||||||||| ||||||| ||| |||||||||||||||| Sbjct 2311031 TAATTTAATAAATACTAATAAACTAAA----CGAGGTGTCTTTTGTATAAAAATTATAAT 2311086 Query 40267 ATGACCCAACTTACACTACCAATAGAAACTTCTGTTAGAATTCCTCAAAATGATATTTCA 40326 ||||| ||||||||||||||||| |||||||| ||| || || ||||||||| ||| Sbjct 2311087 ATGACTCAACTTACACTACCAATGGAAACTTCAGTTCTTATACCCACAAATGATATGTCA 2311146 Query 40327 CGATATGTTAATGAAATTGTTGAAACGATACCTGATAGCGAATTCGATGAATTCAGACAT 40386 | |||||||| ||||| |||||||| | |||| | ||||||||| |||| Sbjct 2311147 CTATATGTTACTGAAACCGTTGAAACAACCCCTGCAA---------ATGAATTCAAACAT 2311197 Query 40387 CATCGTGGCGCAACATCCTATCATCCAAAAATGATGTTAAAAATTATCTTATATGCATAC 40446 ||||||| || ||||| |||||||| | ||| | ||||||| |||| ||||||| ||| Sbjct 2311198 TATCGTGGTGCTACATCATATCATCCTATAATAAGGTTAAAACTTATTCTATATGCTTAC 2311257 Query 40447 ACTCAATCTGTATTTTCTGGTCGTAGAATAGAGAAATTACTTCATGACAGTATTCGAATG 40506 | ||||| |||| || |||||| || ||| ||||| ||| || ||||| |||||| Sbjct 2311258 GCACAATCCGTATCGCCTAGTCGTAAAACAGAAAAATTGCTTAGTGGTAGTATCCGAATG 2311317 Query 40507 ATGTGGTTAGCTCAAAATCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTAAAT 40566 |||||| || | |||||||||||| ||| ||||||||| ||||||||||||| ||||||| Sbjct 2311318 ATGTGGCTATCACAAAATCAAACAACTTTTTATAAAACAATTAATCGTTTTAAAGTAAAT 2311377 Query 40567 CCTAATACT-GATGCATTAATTGAATCTTTATTTATTCAGTTTCATAGTCAATGTTTAAA 40625 ||| || | |||| || | |||| ||||||||||| ||||| ||||||| | | Sbjct 2311378 CCT-GTAGTAGATGTCCTATTAAAATCATTATTTATTCAATTTCACGATCAATGTCTGTA 2311436 Query 40626 GCAAAATCTTATTGATGATAATTCAATTT 40654 ||||||||||| ||||||| | |||| Sbjct 2311437 ACAAAATCTTATAAATGATAAGACTATTT 2311465 Score = 172 bits (190), Expect = 2e-38 Identities = 240/324 (74%), Gaps = 13/324 (4%) Strand=Plus/Plus Query 39976 GGGACATAAATCCCTaaaaaaaCA-GCAGTAAGATATTTTCTAATTGAAAATTATCTTAC 40034 ||| |||||||||| |||||| | ||| | | || ||| |||| || | |||| | Sbjct 2841593 GGGGCATAAATCCCAGAAAAAAGAAGCACTCAAATGATTT--AATTCAAT-TCATCTGAG 2841649 Query 40035 TGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGT 40094 |||| ||| | ||||| |||||||||||||||| ||| ||||||||| || | | | Sbjct 2841650 TGCT--TCTTTTTTTATTCAATACTTCGTATTGA-TGG-TTCGCTTTCTCAGAGGACAGA 2841705 Query 40095 CTCAGCCTTGGTCTTCGA-CTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGT 40153 ||||||| || || | || | ||| | ||||| ||||||| || || || ||| Sbjct 2841706 TTCAGCCT--GTAATCCAGCTTGTCCTGTTTCCTCAAGAGTCTCATCAA-AACACGTCGT 2841762 Query 40154 ATTAACATGTAATTTTACTTTGAAATACTTTaaaaaaaTAAGACACTTTCGTATAATTTA 40213 || |||| ||||||| || ||||||||| |||||||||| | ||| |||||||||| Sbjct 2841763 GTTCCTATGTTATTTTACATTAAAATACTTTTAAAAAATAAGGCCCTTACGTATAATTTG 2841822 Query 40214 ATAAATACCACTAAACTAAATTAACGAGGTGCCTTATGTATAAAAATTATAACATGACCC 40273 || ||||| | |||||||||||||| | | ||||||| ||||| |||||| |||| Sbjct 2841823 ATCAATACGATTAAACTAAATTAACAAAGCGCCTTATAAATAAAGGTTATAAATTGACTT 2841882 Query 40274 AACTTACACTACCAATAGAAACTT 40297 | | |||||| ||| ||||||| Sbjct 2841883 AGCACACACTATTAAT-GAAACTT 2841905 Score = 156 bits (172), Expect = 1e-33 Identities = 195/255 (76%), Gaps = 12/255 (5%) Strand=Plus/Plus Query 39980 CATAAATCCCTaaaaaaaCAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG 40039 |||||||| ||||||| |||| | |||| ||| |||| || | |||| | |||| Sbjct 2386485 CATAAATCTA-AAAAAAATAGCACTTAGATGATTT--AATTCAAT-TCATCTAAGTGCT- 2386539 Query 40040 TTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAG 40099 ||| | ||||| ||||||||||||||| ||||| ||||||| ||| || ||| Sbjct 2386540 -TCTTT-TTTATTCAATACTTCGTATTGT-TGGCT-CGCTTTCTTAGTGTATATCTTCAC 2386595 Query 40100 CCT-TGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAA 40158 ||| | |||||| ||| || |||| ||||| || ||||| || ||||| || ||||| Sbjct 2386596 CCTGTAGTCTTCAACTTGCCCTGCCCCCTCGAGAATCTCGTCAA-AATACATCGCATTAA 2386654 Query 40159 CATGTAATTTTACTTTGAAATACTTTaaaaaaaTAAGACACTTTCGTATAATTTAATAAA 40218 |||||||||| | || |||||||| |||| |||||| ||| |||||||||||||||| Sbjct 2386655 CATGTAATTTGATATTAAAATACTTGAAAATT-TAAGACCCTTACGTATAATTTAATAAA 2386713 Query 40219 TACCACTAAACTAAA 40233 || ||||||||||| Sbjct 2386714 CACTACTAAACTAAA 2386728 Score = 107 bits (118), Expect = 5e-19 Identities = 235/339 (69%), Gaps = 36/339 (11%) Strand=Plus/Minus Query 39975 TGGGACATAAATCCCTaaaaaaaCAGCAGTAAGATATTTTCTAATTGAAAATT-ATCTTA 40033 |||||||||| ||| | ||||| |||| | |||| ||| ||| | |||| |||| | Sbjct 947153 TGGGACATAA--CCCCAGAAAAATAGCACTCAGATGGTTT--AAT--ACAATTCATCTGA 947100 Query 40034 CTGCT--GTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGC 40091 |||| ||| ||||| ||||||||||||||| | |||| |||| ||||| || Sbjct 947099 GTGCTTAGTT-----TTTATTCAATACTTCGTATTG-TTAGCTT-ACTTTTTTAGGGAGC 947047 Query 40092 CGTCTCAGCCT-TGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTA 40150 | |||| || | |||||| || | ||| | ||||| ||||||||||| ||||| Sbjct 947046 AGCTTCAGTCTGTAGTCTTCTGCTTGTCCTGTTTCCTCAAGAGTCTCGCCA-AAATACGT 946988 Query 40151 CGTATTAACATGTAATTTTACTTTGAAATACTTTaaaaaaaTAAGACACTTTCGTATAAT 40210 || ||| | ||| ||| | || | | |||| |||||||| || | | || ||||| | Sbjct 946987 CGCATTTATATGGAATCTCACATCAAGATAC--TAAAAAAACAATGCCCATTTGTATAGT 946930 Query 40211 TTAATAAATACCACTAAACTAAATTAACGAGGTGCCTTATGTATAAAAATTATAACATGA 40270 || | |||| || |||| | || ||| |||||| ||| |||||| Sbjct 946929 ------AAAATTACTATAC-AAAT-------GGGCATTA--TATAAATTTTAAAACATGG 946886 Query 40271 CCCAACTTACACTACCAATAGAAACTTCTGTTAGAATTC 40309 | ||||| | | ||||||| ||||||||| || ||||| Sbjct 946885 CTCAACTAATATTACCAATTGAAACTTCTATTTTAATTC 946847 Score = 105 bits (116), Expect = 2e-18 Identities = 178/247 (72%), Gaps = 13/247 (5%) Strand=Plus/Minus Query 39974 CTGGGACATAAATCCCTaaaaaaaCAGCAGTAAGATATTTTCTAATTGAAAATTATCTTA 40033 |||| ||||||||| | ||||| || | | || | ||| |||| || | |||| | Sbjct 2170302 CTGGAACATAAATCTCAGCAAAAA-AGTACTCAGGTGATTT--AATTCAAT-TCATCTGA 2170247 Query 40034 CTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCG 40093 |||| || | |||| ||||||||||||||| |||| || ||||| ||||| | Sbjct 2170246 GTGCTTTTTTGTATT----CAATACTTCGTATTG-CTGGC-TCTCTTTCATAGGGATTAG 2170193 Query 40094 TCTCAGCCT-TGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACG 40152 ||||||| | |||||| || | || ||||| | ||||||||||| ||||| | Sbjct 2170192 CTTCAGCCTGTAGTCTTCAGCTTGTCCTATTCCCTTAAGAGTCTCGCCA-AAATACGTTG 2170134 Query 40153 TATTAACATGTAATTTTACTTTGAAATAC-TTTaaaaaaaTAAGACACTTTCGTATAATT 40211 ||| | || |||||| || |||| | |||||||||||| || |||| ||||| ||| Sbjct 2170133 TATCCATATAGCATTTTATATTAAAATGCTTTTAAAAAAATACGAGACTTACGTATTATT 2170074 Query 40212 TAATAAA 40218 ||||||| Sbjct 2170073 TAATAAA 2170067 Score = 96.9 bits (106), Expect = 1e-15 Identities = 125/169 (74%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 328 AAGCGTTTTATAAAGCTTGTAAAAAATA---TAAGGGCaaaaaaaGGGCAGATTTAAGCT 384 ||| |||||||| | |||| ||||| ||||| || ||||||||||||| | | Sbjct 2303995 AAGGGTTTTATA--GGTTGTTCAAAATTAACTAAGGTCAGAAAAAGGGCAGATAGAT--T 2303940 Query 385 AACTTGGAATGTTTTCGAGTTTTTGAGTTAGTTCTCTATCCATTTTTTCAGTTACATGAG 444 |||||||||| ||||| | ||| | |||| | | | |||| |||||| |||| ||| | Sbjct 2303939 AACTTGGAATATTTTCAAATTTCTAGGTTAACTGTTTGTCCA-TTTTTCTGTTAAATGCG 2303881 Query 445 TATATATGCGAATGGTTGTTTTTTCATCTACATGTCCTACCCTTTTCAT 493 | ||||| |||| || |||||||| || ||| || || |||||||| Sbjct 2303880 TGTATATTTGAATAGTAGTTTTTTCGTCAGTATGACCAACTCTTTTCAT 2303832 Score = 80.6 bits (88), Expect = 8e-11 Identities = 125/175 (71%), Gaps = 14/175 (8%) Strand=Plus/Minus Query 40186 aaaaaaTAAGACACTTTCGTATAATTTAATAAA--TACCACTAAACTAAATT---AACGA 40240 |||||||||| | ||||| ||| ||||||| |||| || | |||||| ||||| Sbjct 2707305 AAAAAATAAGGCCCTTTCTTAT----TAATAAAATTACC-CTCACATAAATTTAAAACGA 2707251 Query 40241 GGTGCCTTATGTATAAAAATTATAACATGACCCAACTTACACTACCAATAGAAACTTCTG 40300 | | | |||| | |||||| |||| || |||| |||||||| |||| ||| Sbjct 2707250 AGCAC----TATATATAGGTTATAAAATGAATTAAATTACCCTACCAATGGAAAGTTCAA 2707195 Query 40301 TTAGAATTCCTCAAAATGATATTTCACGATATGTTAATGAAATTGTTGAAACGAT 40355 || |||| ||| ||||| || |||||| | | || |||||||||||||| || Sbjct 2707194 TTTTAATTTCTCTGAATGACATCGCACGATTTATAAACGAAATTGTTGAAACAAT 2707140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143418412222956