Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq63 120 8e-24 seq41 77.0 8e-11 >seq63 Length=3029943 Score = 120 bits (132), Expect = 8e-24 Identities = 349/531 (66%), Gaps = 15/531 (3%) Strand=Plus/Minus Query 2956 GAAATCAAGTATTATGGCTATTACCAATGGGTTTTCATCGTATTGTTCATCCAAGCGGTG 3015 ||| |||| || || || ||||| ||||| | | |||| |||| |||||||| || Sbjct 2537272 GAAGTCAAATACCATAAATACTACCAGTGGGTGTGCTTCGTCCTGTTTTTCCAAGCGATG 2537213 Query 3016 TTCTTCTCCATTCCGCAGTACATCTGGAAGGTATGTGAAGGAGGGAAAATGAAGACATTG 3075 |||||| | | ||| |||| | |||||| || || || |||| || |||| | Sbjct 2537212 CTCTTCTACGTGCCGAGGTACCTGTGGAAGACGTGGGAGGGCGGGAGGATCAAGATGCTC 2537153 Query 3076 GCTCATGATCTGA-CTTCACCGTTCCTGAGCAAAGAGTGCATCACAGAGAAGGTGGATCA 3134 | | ||||| | || | ||||| ||||| | ||||||| | || | | | | Sbjct 2537152 GTCCTGGATCTCAACTGCCCCGTTT-TGAGCGAGGAGTGCAAGAAGGACAGGAAAAAGCT 2537094 Query 3135 TTTGATGGATTATTTTTTCATGCAGCTGCACGCGCAAAACTCTTACGCCTACAAATACTT 3194 | | ||||| || | | | ||| |||| || | |||||| || | ||| Sbjct 2537093 CCTCGTCGATTACTTCACGACAAACTTACACACGCAGAATTTCTACGCCATCAGGTTCTT 2537034 Query 3195 TGGCTGCGAGCTGCTAAACTTTGTCAACGTTGTCGCACAGATATGCTTCATGAATGCCTT 3254 |||||| |||| ||||| |||||||| |||| ||||| | ||||||| || || Sbjct 2537033 CATATGCGAGGTGCTCAACTTCGTCAACGTCCTCGCTCAGATCTACTTCATGGAT---TT 2536977 Query 3255 TATAGGCGAAGACTTTTTGTTG---TACGGAATCTATGTTACCTTCTTCAACCAG--GAA 3309 | | ||||| | || | ||||| | | || | |||| | | | | Sbjct 2536976 TTTCCTCGAAGGCGAGTTCACGACCTACGGCTCCGACGTGGTCAGGTTCACCGAAATGGA 2536917 Query 3310 GCCGCCCATCCGAACATGACGAACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGT 3369 |||| ||| || || ||||||| | |||||||||| | | || || Sbjct 2536916 GCCGGAGGACCGC----GAGGA-CCCCATGTCCAGGGTCTTTCCAAAAGTGACCAAGTGC 2536862 Query 3370 ACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTC 3429 || || ||||| |||||||| ||||| | || | || | ||| || |||||| ||||| Sbjct 2536861 ACGTTCCACAAGTACGGTCCGTCGGGTGACGTGCAGAAGTTCGACGGCCTCTGCGTCCTC 2536802 Query 3430 CCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 ||| ||| | |||||||||||||||||| | |||||||||||||||||| Sbjct 2536801 CCGCTCAACATCGTCAACGAGAAGATCTACGTCTTCCTCTGGTTCTGGTTC 2536751 >seq41 Length=5183572 Score = 77.0 bits (84), Expect = 8e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 3419 TCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGT 3478 |||||||||||||| |||||||||||||| ||||||||| | ||| | |||||||||| Sbjct 1526260 TCTGCATCCTCCCGCTCAACGTGGTCAACGAAAAGATCTACGTCTTCTTGTGGTTCTGGT 1526201 Query 3479 TC 3480 || Sbjct 1526200 TC 1526199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479808627000