Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_009237.1 Length=37446 Score E Sequences producing significant alignments: (Bits) Value seq157 190 5e-44 seq44 113 1e-20 >seq157 Length=245904 Score = 190 bits (210), Expect = 5e-44 Identities = 452/674 (67%), Gaps = 22/674 (3%) Strand=Plus/Plus Query 27686 CATCGAGCGGTGCCAGTTCGACCATTTCGCATCGCTGCACGACCTCGCGGACGTCCTGGT 27745 |||| ||||| | ||| || | || |||||| ||||| || || || | ||| || | Sbjct 168761 CATCCAGCGGCGGCAGGTCAATCACTTCGCAGCGCTGTACCACTTCCCTGACCGCCAGCA 168820 Query 27746 TGCGTTCGGACAGCTTGACTTTCAGCTCCGGTTGGCCGATCAGGATGATGGACAGCAGTT 27805 ||| ||||| | |||| | ||| || ||||| || | ||||| |||||||||||||| Sbjct 168821 GGCGCTCGGATAACTTGTCGCCCAGTTCGGGTTGTCCCAGCAGGACGATGGACAGCAGTT 168880 Query 27806 TTTTAAACCCCATC-TCCAACTCGAAGAAACGCTTCAGGTGCTTGAGCGTCGCGATCGGC 27864 ||||||| ||||| |||| ||| ||||| || || |||||||| | |||| ||| ||| Sbjct 168881 TTTTAAA-GCCATCTTCCAGCTCAAAGAAGCGTTTAAGGTGCTTTAAGGTCGGGATGGGC 168939 Query 27865 AATGCATGCGCCTCATCGATCACGAGGCAATGCTGGTAGCCCGCCGCGTGGCTTTCTTTC 27924 | ||| || || || ||||| || ||| ||| || || | ||| ||||| Sbjct 168940 AGGCAATGGGCTTCTTCAATCACCAGTACATGGCTGTACCCGGCACGGCTGCTCTCTTTT 168999 Query 27925 AGGGCCTTGTGCAACTGCGCGAAGCGGGCTTCCGGGCTGCTCTTGACCTTCTCCAGCGGG 27984 | ||| | ||| ||||||||||| || || |||| || ||||| ||| Sbjct 169000 AATAGTCGGTGTAGCTGACGAAAGCGGGCTTCTGGTGAGCGTTTGAGTTTTTCCAGTGGG 169059 Query 27985 GCAACGG--CGGCCATGATCGCTTCGGCGA---TGTGCGTCGCCTTCAGCGTCTTGCCTT 28039 || | || || || || |||||||||| || ||| || ||||| |||||||| | Sbjct 169060 GCCAGGGTATGGACA--ATGGCTTCGGCGAGACTG-GCG--GCTTTCAGGGTCTTGCCCT 169114 Query 28040 TCTGGTCGTTGTCCTCCATCGCAAGCACGTACGGCTTGATGACGATGATCGGATGGCTCT 28099 ||||||||||| ||||| || |||||||| || || || || | | || | | | Sbjct 169115 GATGGTCGTTGTCTTCCATTGCCAGCACGTAGGGTTTAATCACCACCACGGGGGCGTTTT 169174 Query 28100 CGCGCATCACGCGGTCTTCGAGGTCGCGCATCAGTGTCGTCTTGCCGCCGCCCGATTCCG 28159 | || | |||||| ||||| | ||| || | || || || ||||| Sbjct 169175 CCCGATAAATGCGGTCAGTCAGGTCATGTCGCAGAGTGCTTTTACCCGAACCGGATTCAC 169234 Query 28160 CAACGACGGCGAGGAGCCCACCGTGCTTTGCGGTCTGGAACATAGCCTCGCGCACATAGC 28219 | | ||||||| | ||||| | ||||||||| ||| ||||| |||||||| | Sbjct 169235 CGATAACGGCGATAAAGCCACCATAACGGGCGGTCTGGTACAACGCCTCACGCACATAAC 169294 Query 28220 GGATGTCGGGGCTCACGAACATGTCTTCGTGCGACTG------GATGTCATCCGCGAACG 28273 || | || ||| | | |||| ||||| || || | |||||| | || | Sbjct 169295 GGCTTTCAGGGGTTAAAAACACATCTTCATGACCTTGTACCGCGTTGTCAT---CAAATG 169351 Query 28274 GGTCGCGGAACAGGCCGAAGTGCTTACGGGTGGCTGGTGCGAGAACCTGTTTGCGCAGTA 28333 || |||| ||||| || || ||||| |||||| || | |||||||| |||| Sbjct 169352 GGGCGCGAAACAGCCCAAAATGCTTTTTGGTGGCAGGCAGTAATACCTGTTT-TTTAGTA 169410 Query 28334 ACATGGATTCCTCC 28347 |||||| || ||| Sbjct 169411 ACATGGTGTCTTCC 169424 Score = 149 bits (164), Expect = 1e-31 Identities = 524/800 (66%), Gaps = 35/800 (4%) Strand=Plus/Plus Query 29271 ACGTCGTATTC-CTCGCCACGGAACGACACGCGCAGTTTCGGCGTGACCTTTCGGCTTTC 29329 || |||||||| ||| || | |||||||||||| || | | | ||||| ||| |||| Sbjct 170286 ACATCGTATTCACTCCCC-CTGAACGACACGCGAAGGTGGGTGCTAACCTTACGGTTTTC 170344 Query 29330 CGGCGCGGCAACCGCCAGCTCTCGACAGACGTCAAGCGA-CGGGGCCTTGATCAGTTGCT 29388 |||| |||||||| || || || ||||||| ||| ||| |||||||| | |||| Sbjct 170345 CGGCAGACTCACCGCCAGTTCGCGGCATACGTCAA-CGAGCGGTGCCTTGATTAACTGCT 170403 Query 29389 GGGCGGTAATGCGCATCCACGCCTCGCTACGCGTGGCACCGTGGCGGCTATGCGTTTCGG 29448 | | ||| || || | ||| ||| | || || ||| |||| |||| ||| Sbjct 170404 GCGGGGTGATCCGTAACCAACAGTCGGTGCGGGTCATGCCGGTACGGCGATGCAGCGCGG 170463 Query 29449 TTGCGTTGAAGTGCATGCGCCAGCGCTTCGCGAGCGCGTTCAGTTCGTCGAGGCTGGTTA 29508 | ||| | | | ||||| | | || ||||||||| || | ||| Sbjct 170464 TGCGGTTATACTTTTTACGCCATAACCCGACCAGGTGGTTCAGTTCATCAATA----TTA 170519 Query 29509 CCGGTTGG----AACTTGAGGCCCGGTTCGAACTTGCGTTCGATGAGGTTCCGCGCGTTT 29564 || | | ||| ||||| | ||| || | || |||| | || ||||| ||| Sbjct 170520 TCGACTTGCACAAACCGCAGGCCGGATTCAAAATGGCACTCGAGAATGTCGCGCGCCTTT 170579 Query 29565 TCCACCTGTCCCGTGGCGCGTGCATTGCCGACCTTGTGCACGATCAGCTCGATACCGAGC 29624 ||||| || || ||||| || |||| | | || || |||| || | |||||||| Sbjct 170580 TCCACTGAGCCGGTAGCGCGGGCGTTGCGGGCTTTATGGGCGATAAGTTGAATACCGAGG 170639 Query 29625 GAGCGGCACAGGTTGCGGGTCATGGAGG---CCGTGTTCGCCGATCCAGCGTCGAGCATC 29681 | |||||||| || || |||| | || | || | || | |||| | || Sbjct 170640 GTTTTACACAGGTTACGCATCGTGGACGAGACCAGG---GCACAACCGGGGTCG-GTATA 170695 Query 29682 A-GAATGCGCGGAACACCATGCATCAGGTCGGCGCCGCCGCGTTCCTGCATTGCGTTAAT 29740 | | ||| |||| || ||||||| | |||||| || |||||||| ||||| |||||||| Sbjct 170696 AAGGATGTGCGGCACGCCATGCAGTACGTCGGCCCCACCGCGTTCTTGCATGGCGTTAAT 170755 Query 29741 GAGCG--TCGAGCAGAGGTTTTCGCCCGACTCCGCGCCCATCACGTACTCGGTGTAAATC 29798 | | ||| | | || | | |||| | || |||| | |||||||| ||||||| Sbjct 170756 CAACACATCG-GTAAAGTTCTGCGCC-GTTTCGCCGCCGAAGCGGTACTCGGCGTAAATC 170813 Query 29799 CAGTCGCTCGCGTGGTCGGAGATTTCGTAGCTCCACACACGATCCGCAGCGATCCGGGCG 29858 ||| | || | |||||||| | || | ||| || || || | | || || Sbjct 170814 CAGCCACTGGTGTGGTCGGTCAGCTCAAATGACCAGACGCGGTCATTGACTACTCGCGCC 170873 Query 29859 AGGTTCTTCGGCTTGTTCTTGTAGAACTCAGCGTGATCCATCACGCGAAGCCCGTTCGCA 29918 || || || ||||||||||||| || || || | || ||||| ||| || ||| | | Sbjct 170874 AGATTTTTTGGCTTGTTCTTGTTAAATTCCGCCTCATTCATCATGCGCAGGCCGCTATCG 170933 Query 29919 CGCGC-GTCGGCGCTA-GGC-------TTCAGGTAATACAGCACGCACAGGCTCGCGTCG 29969 |||| || || || ||| ||||||||||| ||||| ||||| || || Sbjct 170934 CGCGTAGTGAGCCCTTTGGCGGGATTTTTCAGGTAATAGAGCACACACAGCGAGGCATCC 170993 Query 29970 ATCTGCCATACGTGATTCGGATGCAGGCTCGCCAGCTCGGTCAC-CGGTGCCGGTGCGAG 30028 | |||||| || ||||| || |||||||| | || | ||| ||||| || ||| Sbjct 170994 AGCTGCCAGACATGATTGGGGTGCAGGCTTTTTACCT-GTACACAGGGTGCAGGGGCGCC 171052 Query 30029 CAACTGGTCGGGATGCACGC 30048 ||||||| ||| |||| || Sbjct 171053 TAACTGGTTGGGGTGCAGGC 171072 Score = 141 bits (156), Expect = 2e-29 Identities = 256/371 (69%), Gaps = 4/371 (1%) Strand=Plus/Minus Query 30892 CGTCATGCGATCGATGTCGTCGAGGGTCATCCCCGCTACAGTGCCGCCGTCCGCAAGCGC 30951 || ||||||||| | || || | |||| || || | |||||||| || ||||| || Sbjct 173679 CGACATGCGATCAACATCATCCAAAGTCAAACCGGCAATGGTGCCGCCTTCGGCAAGTGC 173620 Query 30952 CGCAAGGTCTTCGTCGTCTTCGGCGACCAGTTCGAAAAGTTTGGTTTTGCCCAAAACGGA 31011 |||| ||||| || ||||| | | || || || ||||| |||||||| ||||| || Sbjct 173619 TACAAGATCTTCATCATCTTCAGTCATCAACTCAAAGAGTTTTGTTTTGCCTAAAACCGA 173560 Query 31012 CAGCGCTGTCCGTTTTGACTCCAGCGCTGGCGACATGAACTTGACCGATGCCGCCATCAT 31071 | | | || ||| ||||| | || || | | || | || ||| |||||| Sbjct 173559 AATTGATTTCGTTTTCCCCTCCAAAGTAGGTGATAGATATTTAAGGGAAGCCTTCATCAT 173500 Query 31072 TCGACGCGCGGTGCGTTCGTTCAG-CCCGAGC-TGGTGTTCGACGATCTCTGTGAATTCG 31129 | | | || || | ||| || || ||| | | || |||| || || | || ||||| Sbjct 173499 TAGCTGTGCTGTTCTTTCATTAAGACCCAATCGTGTTGTT--ACAATATTGGTAAATTCA 173442 Query 31130 CCGTGCGGTTCGTTTTCCTTCAGCAGGATCAGGCGCTTCCCGGCTTCCAGCATGGCTTCG 31189 || || || || ||||| || | | ||| || || || || |||||||||||||||||| Sbjct 173441 CCATGTGGCTCATTTTCTTTGATAATGATGAGTCGTTTACCTGCTTCCAGCATGGCTTCG 173382 Query 31190 GCAGATTGCGCCATGTAGAAGCGCGCTTCGTTCACGACACGATGGCGTTCGTACGGCAAA 31249 ||| || ||||| |||||||||||||| | ||| | | | | ||| || |||| Sbjct 173381 GCACTCTGTGCCATATAGAAGCGCGCTTCATGCACAATCCTCTCCCTTTCATAGGGCAGC 173322 Query 31250 CCATCGCCAAA 31260 ||||| ||||| Sbjct 173321 CCATCCCCAAA 173311 Score = 140 bits (154), Expect = 8e-29 Identities = 252/365 (69%), Gaps = 4/365 (1%) Strand=Plus/Plus Query 30895 CATGCGATCGATGTCGTCGAGGGTCATCCCCGCTACAGTGCCGCCGTCCGCAAGCGCCGC 30954 ||||||||| | || ||||| |||| ||||| | |||||||| || ||||| || | Sbjct 171937 CATGCGATCAACATCATCGAGCGTCAAGCCCGCGATGGTGCCGCCTTCGGCAAGTGCTAC 171996 Query 30955 AAGGTCTTCGTCGTCTTCGGCGACCAGTTCGAAAAGTTTGGTTTTGCCCAAAACGGACAG 31014 ||| ||||| || ||||| | | || || || ||||| |||||||| ||||| || | Sbjct 171997 AAGATCTTCATCATCTTCAGTCATCAACTCAAAGAGTTTTGTTTTGCCTAAAACCGAAAT 172056 Query 31015 CGCTGTCCGTTTTGACTCCAGCGCTGGCGACATGAACTTGACCGATGCCGCCATCATTCG 31074 | | || ||| ||||| | || || | | || | || ||| ||||||| | Sbjct 172057 TGATTTCGTTTTCCCCTCCAAAGTAGGTGATAGATATTTAAGGGAAGCCTTCATCATTAG 172116 Query 31075 ACGCGCGGTGCGTTCGTTCAG-CCCGAGC-TGGTGTTCGACGATCTCTGTGAATTCGCCG 31132 | || || | ||| || || ||| | | || |||| || || | || ||||| || Sbjct 172117 CTGTGCTGTTCTTTCATTAAGACCCAATCGTGTTGTT--ACAATATTGGTAAATTCACCA 172174 Query 31133 TGCGGTTCGTTTTCCTTCAGCAGGATCAGGCGCTTCCCGGCTTCCAGCATGGCTTCGGCA 31192 || || || ||||| || | | ||| || || || || ||||||||||||||||||||| Sbjct 172175 TGTGGCTCATTTTCTTTGATAATGATGAGTCGTTTACCTGCTTCCAGCATGGCTTCGGCA 172234 Query 31193 GATTGCGCCATGTAGAAGCGCGCTTCGTTCACGACACGATGGCGTTCGTACGGCAAACCA 31252 || ||||| || || ||||| || | ||| | || | || | || ||||| || Sbjct 172235 CTCTGTGCCATATAAAAACGCGCCTCATGCACAATGCGCTCACGCTGATAGGGCAACCCC 172294 Query 31253 TCGCC 31257 ||||| Sbjct 172295 TCGCC 172299 Score = 138 bits (152), Expect = 3e-28 Identities = 333/495 (67%), Gaps = 17/495 (3%) Strand=Plus/Plus Query 3600 CTGGGATTGGGAGGAGCTTTGGCAGGACGCCCAGGCGAAGGCGTTC-ACGGTCGCCAAGG 3658 |||||||||| |||| | ||||| | ||||| || || || | ||||| ||||||| Sbjct 182667 CTGGGATTGGCAGGACGTCTGGCAAGCAGCCCATGCCCAGA-GTGCGACGGTGGCCAAGG 182725 Query 3659 TCACGCGCCTGGACATCCTGCAGGACATTCGCAACGCGGTCGAAACC-GCAATCAGCGAA 3717 | || | ||||| || |||||||||||| | ||| | |||||| || | ||| Sbjct 182726 TGACACAACTGGATATTCTGCAGGACATTTATCAGGCGCTGGAAACCCGCCCTGGCGGAA 182785 Query 3718 GGCAAGACGCTGCGATGGTTCACGAAGGAGCTGACGCCTGTCCTGCAATCCAAGGGCTGG 3777 ||||| || | ||||| | ||| |||| || || ||||| |||| || ||| Sbjct 182786 GGCAAAACCGGTCAGTGGTTTGCCCGGGAATTGACCCCGGTACTGCAGGCCAAAGGATGG 182845 Query 3778 TGGGGAAAGCAGGAACACGTCGACCAGGGCACCGGCGAGA---TCACCCAGGTTCAGCTC 3834 ||||| | ||||| | ||||| | | ||| || |||| ||| || | Sbjct 182846 TGGGGCGAACAGGATATCACCGACCCAGTGAGCGGGCAGCCGGTCAC---GGTGCAATTA 182902 Query 3835 GGCAGCCCGTGGCGCCTGCAGACCATCTACCGGACGAACCTGCAAACCGCCTACATGGCG 3894 ||||||||| ||| ||| ||||||| || || || || || ||| ||||| || Sbjct 182903 GGCAGCCCGCAGCGACTGGAGACCATTTATCGCACCAATTTGACTACCCTCTACAACGCC 182962 Query 3895 GGCCGCTATGCCGAGCAAATG---GCGAACGTCGGCGATCGGCCGTACTGGATGTACGTG 3951 || |||| || || |||| | ||| || | | || || ||||||||||| ||| Sbjct 182963 GGGCGCTGGGCAGA---AATGCGGGAGAATGTTGAGGCCCGTCCCTACTGGATGTATGTG 183019 Query 3952 GCGATCCTCGACAGCCGCACGCGCCCGAGCCATCGGGCAATGAACGGCAAGGTG-TTCCG 4010 ||||| | || | ||| || ||| ||||| | ||| || | ||| |||| ||||| Sbjct 183020 GCGATACGAGATAACCGTACCCGCAAAAGCCACCTGGCGCTGCATGGCCGGGTGTTTCCG 183079 Query 4011 CTACGACGATCCGTTCTGGCAGTCGTTCTACCCGCCGAACGGCTGGGGCTGCCGGTGCCG 4070 | || || ||| | |||| || |||| ||||| || |||||| |||| || ||| | Sbjct 183080 GCA-GATGACCCGGTATGGCGCGCGCTCTATCCGCCCAATGGCTGGCGCTGTCGCTGCAG 183138 Query 4071 CGTGGTTGCGTTGTC 4085 ||| | || |||| Sbjct 183139 TGTGATGGCCCTGTC 183153 Score = 113 bits (124), Expect = 1e-20 Identities = 254/371 (68%), Gaps = 17/371 (5%) Strand=Plus/Plus Query 35634 GCAAGTGCCCCCCGAG--GCGCTGGCGTACCGCGCCGAGCTGACGCGCAACGCGCGCGCC 35691 ||| || |||| | || |||||||| ||||| || || |||| |||||||| || Sbjct 175738 GCACGTCCCCCACAAGCGGCGCTGGCATACCGGGCTGACCTGATACGCAACGCCCGTCTG 175797 Query 35692 GTCTGGGGTATCGATGCGCCTGTCTCGTCGTTCGCGGCGCAAATCCACCAGGAAAGCCGC 35751 || ||||| || ||||||| || || || || || || || |||| |||||| || Sbjct 175798 GTGTGGGGACTCAATGCGCCGGTGGCGGATTTTGCCGCCCAGATTGACCACGAAAGCGGC 175857 Query 35752 TGGC-GCGCGGACGCAGTCAGCGTCGTCGGCGCGCGTGGCATGTCGCAGTTCATGCCATC 35810 |||| || || || || | ||||||||| || || |||||| ||||| | Sbjct 175858 TGGCAGCCGGGTATCAC-CAACAATATCGGCGCGCAGGGTCTGGGGCAGTTTATGCCTGC 175916 Query 35811 GACGGTCGACTGGATCGCGGGCGCCTATCCGTCCGAGCTGGGCGAGGC--GCAGCCGTTC 35868 || || |||||| | ||||| || | | || |||| ||| || ||| || Sbjct 175917 CACCACCGCCTGGATTG-GGGCGTTAATGC--CGGAACTGG-CGACCAAAGC-GCCCCTC 175971 Query 35869 AATCCGTCCTGGTCGATTCGTGCGCTCGTGCGCTACGA---CCGGCACCTCTGGGAGCGC 35925 ||||| |||| | |||||| | ||| | | ||| | ||| | ||| | ||| Sbjct 175972 AATCCCGGCTGGAGTTTACGTGCGGTGGTGAGTTTCGATAACTGGC---TGTGGCAACGC 176028 Query 35926 ATCACGGCGGCCGGTGCATGTGAGCGCATGGCGATGGCCCTGTCGGCTTACAACGGCGGC 35985 | ||| || ||| |||||||||||||||||| |||||||||| |||||||| ||| Sbjct 176029 TTGTCGGTGGTGAATGCGTGTGAGCGCATGGCGATGACCCTGTCGGCCTACAACGGTGGC 176088 Query 35986 TTGGGCTGGGT 35996 |||||||||| Sbjct 176089 CTGGGCTGGGT 176099 >seq44 Length=6278165 Score = 113 bits (124), Expect = 1e-20 Identities = 245/365 (67%), Gaps = 19/365 (5%) Strand=Plus/Minus Query 30896 ATGCGATCGATGTCGTCGAGGGTCATCCCCGCTACAGTGCCGCCGTCCGCAAGCGCCGCA 30955 ||||| |||| || || || || | || | | ||||||||| || || || ||| Sbjct 3726003 ATGCGGTCGACCTCATCCAGTGTAAGACCGACAATAGTGCCGCC-TCGGCGAGTTGGGCA 3725945 Query 30956 AGGTCTTCGTCGTCTTCGGCGACCAGTTCGAAAAGTTTGGTTTTGCCCAAAACGGACAGC 31015 || |||||||||||||| | ||| ||| ||||||||||| |||||| |||| Sbjct 3725944 AGATCTTCGTCGTCTTCCAGCATCAGCTCGTTGAGTTTGGTTTTTCCCAAACTTATCAGC 3725885 Query 31016 GCTGTCCGTTTTGACTCCAGCGCTGGCGACATGAACTTGACCGATGCCGCCATCATTCGA 31075 |||| ||||| | || ||||||| | | | || ||| |||| | Sbjct 3725884 GCTGATGACTTTGATTGGAGTGCTGGCGGCTTCA--TTAACC--TGCCTGC--------- 3725838 Query 31076 CGCGCGGTGCGTTCGTTCAGCCCGAGCTGGTGTTCGACGATCTCTGTGAATTCGCCGTGC 31135 || || || | || || || || | ||| || || | | || ||||| ||| Sbjct 3725837 ----CGTTGGGTATGG-CATTCCCAGTTGTTCTTCCACTATTTTCATAAACTCGCCTTGC 3725783 Query 31136 GGTTCGTTTTCCTTCAGCAGGATCAGGCGCTTCCCGGCTTCCAGCATGGCTTCGGCAGAT 31195 || || |||||||| || | ||||| || || || ||||||||||||||||||||| Sbjct 3725782 GGCTCATTTTCCTTGAGAATGATCAATCGTTTTCCCGCTTCCAGCATGGCTTCGGCACTC 3725723 Query 31196 TGCGCCATGTAGAAGCGCGCTTCGTTCACGACACGATGGCGTTCGTACGGCAAACCATCG 31255 ||||| | || |||||||||| | ||| | || | ||||| || | || |||||| Sbjct 3725722 TGCGCTGTATAAAAGCGCGCTTTATGCACAATCCGCTACCGTTCATAGGACAGTCCATCG 3725663 Query 31256 CCAAA 31260 ||||| Sbjct 3725662 CCAAA 3725658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119703607051392