Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_009762.3 Length=47785 Score E Sequences producing significant alignments: (Bits) Value seq89 425 2e-114 >seq89 Length=3091062 Score = 425 bits (470), Expect = 2e-114 Identities = 659/934 (71%), Gaps = 8/934 (1%) Strand=Plus/Plus Query 910 AACAAATATCCAGTTGTTTTTGTACATGGATTTTTAGGATTAGTAGGCGATAATGCACCT 969 || ||||||||| || | || |||||||| || ||||||||| | | | |||| ||| Sbjct 971421 AATAAATATCCAATTATCTTAGTACATGGTTTCTTAGGATTAATGGATGGTAATAAACCA 971480 Query 970 GCTTTATATCCAAATTATTGGGGTGGAAATAAATTTAAAGTTATCGAAGAATT-GAGAAA 1028 | ||| ||||||||||||||||||||||| |||| ||||| | |||| ||| || ||| Sbjct 971481 GATTTGTATCCAAATTATTGGGGTGGAAAGAAATACAAAGTAAAGGAAGCATTAGAAAAA 971540 Query 1029 GCAAGGCTATAATGTACATCAAGCAAGTGTTAGTGCATTTGGTAGCAACTATGATCGTGC 1088 || ||| ||| | ||| | |||||||| | |||||| |||| || ||||||| |||||| Sbjct 971541 GC-AGGTTATGAAGTATACGAAGCAAGTATAAGTGCAGTTGGCAGTAACTATGGTCGTGC 971599 Query 1089 TGTAGAACTTTATTATTACATCAAAGGTGGTCGCGTAGATTATGGTGCAGCACATGCAGC 1148 |||||| | ||| | ||||| |||||||||| ||||||||||||||||||||||| || Sbjct 971600 TGTAGAGTTATATCACTACATTAAAGGTGGTCAAGTAGATTATGGTGCAGCACATGCTGC 971659 Query 1149 TAAATACGGACATGAGCGCTATGGTAAAACATATAAAGGAATCATGCCTAATTGGGAACC 1208 ||||||||| ||| | | || ||||||||||| |||| | ||||| |||||| |||| Sbjct 971660 TAAATACGGGCATAATAGATACGGTAAAACATACGAAGGTGTTATGCCAAATTGGAAACC 971719 Query 1209 TGGTAAAAAGGTACATCTTGTAGGGCATAGTATGGGTGGTCAAACAATTCGTTTAATGGA 1268 ||| | || |||||||| | || || ||||||||||| ||||| ||||||||| | || Sbjct 971720 AGGTCAGAAAGTACATCTAATTGGTCACAGTATGGGTGGACAAACGATTCGTTTACTTGA 971779 Query 1269 AGAGTTTTTAAGAAATGGTAACAAAGAAGAAATTGCCTATCATAAAGCGCATGGTGGAGA 1328 | |||||| | ||| || |||||||||| |||||| | ||||| || Sbjct 971780 GCAATTTTTACGTTTTGGAAATCCAGAAGAAATTAAATATCATGAGCAACATGGCGGTAC 971839 Query 1329 AATATCGCCATTATTCACTGGTGGTCATAACAATATGGTTGCATCAATCACAACATTAGC 1388 ||| || ||||||||| || | | |||||| || |||| || |||||||| || Sbjct 971840 AATTTCTCCATTATTCCAAGGGCAAAAAGATAATATGATTTCATCTATTACAACATTGGC 971899 Query 1389 AACACCACATAATGGTTCACAAGCAGCTGATAAGTTTGGAAATACAGAAGCTGTTAGAAA 1448 ||| |||||||| || || || || |||||||||| | ||||| || | | | || Sbjct 971900 AACGCCACATAAAGGCTCTCAGGCTTCTGATAAGTTAGCAAATA---AAAATTTCATCAA 971956 Query 1449 AATCATGTTCGCT-TTAAATCG-ATTTATG-GGTAACAAGTATTCGAATATCGATTTAGG 1505 || || || | || | || | ||| | ||| || |||| || || ||||| || Sbjct 971957 AAATATATTAAATGATATAGCGAAATTAGGTAATAATAAAAATTCTAAAATTGATTTTGG 972016 Query 1506 ATTAACGCAATGGGGCTTTAAACAATTACCAAATGAGAGTTATATTGACTATATAAAACG 1565 | | | ||||||||||| |||| ||| ||||| | ||||| || ||| |||| | Sbjct 972017 ACTTTCACAATGGGGCTTCGAACAGCAACCTAATGAAACGTATATAGAATATGTAAATAG 972076 Query 1566 CGTTAGTAAAAGCAAAATTTGGACATCAGACGACAATGCTGCCTATGATTTAACGTTAGA 1625 | | | ||| ||||||| | || || |||| | |||||||| | Sbjct 972077 ATTGAAAGATAGCCCGATTTGGAATACTGAAGATGTTGCTACAAGAGATTTAACAACATT 972136 Query 1626 TGGCTCTGCAAAATTGAACAACATGACAAGTATGAATCCAAATATTACGTACACGACTTA 1685 ||| | | | | |||||| | ||| | || || |||||| ||||| ||| Sbjct 972137 TGGTGCAGAAGATTTGAACTTAAATACATCAGTTAACCCTAATATTGTATACACTTCTTT 972196 Query 1686 TACAGGTGTATCATCTCATACTGGTCCATTAGGTTATGAAAATCCTGATTTAGGTACATT 1745 | |||| | || | |||| | |||||| || | | ||| || |||| || Sbjct 972197 TGCAGGACAAGCAACGCATAAAAATAGTTTAGGTCATCACAGACCTAATAGAGGTTTGTT 972256 Query 1746 TTTCTTAATGGATACAACGAGTAGAATTATTGGTCATGATGCAAGAGAAGAATGGCGTAA 1805 | |||||||| ||| |||| | | || ||| | ||| | |||||||| |||| | Sbjct 972257 TGGACTAATGGATTTAACAAGTAAATTGATAGGTAAAGATTCTAGAGAAGATTGGCAAGA 972316 Query 1806 AAATGATGGTGTCGTACCAGTGATTTCGTCATTA 1839 |||||||||||||||| |||| | ||| ||||| Sbjct 972317 AAATGATGGTGTCGTAGCAGTTACTTCTGCATTA 972350 Score = 242 bits (268), Expect = 1e-59 Identities = 641/967 (66%), Gaps = 39/967 (4%) Strand=Plus/Minus Query 983 ATTATTGGGGTGGAAATAAATTTAAAGTTATCGAAGAATTGAGAAAGCAA-GGCTATAAT 1041 |||||||||||||| ||||||| | | | |||| || |||||| || || ||| | Sbjct 26999 ATTATTGGGGTGGAGATAAATTGGATATCCGCCAAGATTT-AGAAAGTAATGGTTATGAA 26941 Query 1042 GTACATCAAGCAAGTGTTAGTGCATTTGGTAGCAACTATGATCGTGCTGTAGAACTTTAT 1101 | | |||| ||| | |||| || |||| |||||||||||||| || || |||||| Sbjct 26940 ACATACGAAGCGAGTATCGGTGCGTTAAGTAGTAACTATGATCGTGCCGTTGAGCTTTAT 26881 Query 1102 TATTACATCAAAGGTGGTCGCGTAGATTATGGTGCAGCACATGCAGCTAAATACGGACAT 1161 || || ||||| ||||| || |||||||||||||| ||||| | || ||||| ||| Sbjct 26880 TACTATATCAAGGGTGGCACGGTGGATTATGGTGCAGCCCATGCTGAGAAGTACGGTCAT 26821 Query 1162 GAGCGCTATGGTAAAACATATAAAGGAATCATGCCTA-ATTGGGAACCTGGTAAAAAGGT 1220 || || ||||||||||||||| |||| | || | | ||| |||| ||| |||| || Sbjct 26820 GAACGTTATGGTAAAACATATGAAGGTGT-ATATAAAGACTGGAAACCAGGTGAAAAAGT 26762 Query 1221 ACATCTTGTAGGGCATAGTATGGGTGGTCAAACAATTCGTTTAATGGAAGAGTTTTTAAG 1280 || | || | ||||||||||||||||||||| | | | | || || || ||| | Sbjct 26761 GCACTTAGTGGCTCATAGTATGGGTGGTCAAACAGTAAGGCAACTTGAGGAATTATTACG 26702 Query 1281 AAATGGTAACAAAGAAGAAATTGCCTATCATAAAGCGCATGGTGGAGAAATATCGCCATT 1340 ||||||||| || |||||| | ||||| || | ||||| || ||||| || || | Sbjct 26701 TAATGGTAACCCAGCAGAAATAGAATATCAAAAGGAACATGGCGGTGAAATTTCCCCGCT 26642 Query 1341 ATTCACTGGTGGTCATAACAATATGGTTGCATCAATCACAACATTAGCAACACCACATAA 1400 ||| || | | | || ||||| ||||| ||||| ||| ||||||||||| Sbjct 26641 TTTCCAAGGAAATAACGATAACATGGTGAATTCAATTACAACCATAGGTACACCACATAA 26582 Query 1401 TGGTTCACAAGCAGCTGATAAGTTTGGAAATACAGAAGC---TGTTAGAAAAATCATGTT 1457 |||| |||| || || ||| || || || ||||| ||||||| || | ||| Sbjct 26581 TGGTACACATGCTGCAGATGCATTAGG---TAACGAAGCTCTTGTTAGACAATTAGCGTT 26525 Query 1458 CGCTTTAAATCGATTTATGGGTAACAAGTATTCGAATATCGATTTAGGATTAACGCAATG 1517 | || ||||| ||||| || | || || | ||||| || || ||||| Sbjct 26524 TGATTACGCCAAATTTAAAGGTAATAAAAACTCAAAAGTAGATTTTGGTTTTGGCCAATG 26465 Query 1518 GGGCTTTAAACAATTACCAAATGAGAGTTATA--TTGACTATATAAAACGCGTTAGTAAA 1575 ||| |||| || | || |||| ||| | | ||| || |||||||| || Sbjct 26464 GGGGCTTAAGCA--GAGAGAAGGAGAAACATACGCTCAATATGTACAACGCGTTCAAAAT 26407 Query 1576 AGCAAAATTTGGACATCAGACGACAATGCTGCCTATGATTTAACGTTAGATGGCTCTGCA 1635 || | | |||| | || | || || | |||||||||||| || ||| |||| Sbjct 26406 AGTGGATTGTGGAAAACAAAAGATAACGGCTTTTATGATTTAACGAGGGAAGGCGCTGCT 26347 Query 1636 AAATTGAACAACATGACAAGTATGAATCCAAATATTACGTACACGACTTATACAGGTGTA 1695 ||||| || || | || | ||||| |||||| || | || |||||||| | | Sbjct 26346 AAATTAAATAAAAACACCTCGTTAAATCCTAATATTGTCTATAAAACATATACAGGAGAA 26287 Query 1696 TCATC---TCATACTGGTCCATTAGGTTATGAAAATCCTGA-TTTAGGTACATTTTTCT- 1750 ||| | | |||| | | || || |||| | || ||| | || ||||| Sbjct 26286 TCAACAAGACCTACTTTGC---TCGGAAATCAAAAATCAGACATTA---ATATGTTTCTA 26233 Query 1751 -TAATGGATACAACGAGTAGAATTATTGGTCATGATGCAAGAGAAGAATGGCGTAAAAAT 1809 | | | ||| ||| | |||||| | | |||| | |||| |||||| ||||| Sbjct 26232 CCATTTACTGTAACAGGTAATGTAATTGGTAAAGCTGCAGAAAAAGAGTGGCGTGAAAAT 26173 Query 1810 GATGGTGTCGTACCAGTGATTTCGTCATTACATCCATCCAATCAACCATTTATTAATGTT 1869 || || | ||| | ||||| ||| |||||| | |||||| | |||| | | | Sbjct 26172 GACGGCTTAGTATCTACTATTTCATCACAACATCCGTTTAATCAAGCCTTTACAGAAGCT 26113 Query 1870 ACGAATGA--TGAACCTGCCACACGAAGAGGTATCTGGCAAGTTAAACCAATCATACAAG 1927 || ||||| |||| || |||||| |||||||| | ||||| | ||| | Sbjct 26112 ACAAATGAAGTGAA-----------AAAAGGTATATGGCAAGTGACTCCAATTAAACACG 26064 Query 1928 GATGGGA 1934 | ||||| Sbjct 26063 GTTGGGA 26057 Score = 89.7 bits (98), Expect = 2e-13 Identities = 174/249 (70%), Gaps = 11/249 (4%) Strand=Plus/Minus Query 3067 TTTTATTTTTTCTTCTAAACGAAACATTGCTTCTTTTTGAGATTGTTTTGTATTCTTGTT 3126 |||||| | || ||||| | || | | |||||| ||||| ||| |||| ||||| Sbjct 2303303 TTTTATCCTATCATCTAATTGGAATAAAGATTCTTTCTGAGAAATTTTAGTATCTTTGTT 2303244 Query 3127 CAACACAACACTTACGC-GCTTCCATTTATCTGTGTATGGATCTTTGTACTTCTCGTAAT 3185 || ||||||| ||| | || || ||||||| |||||| ||||| ||||||| || Sbjct 2303243 CATTACAACACATACTCTGCGTC-ATTTATCCGTGTATAAGTCTTTATACTTCTTATATA 2303185 Query 3186 ATCTGTATTTAGTTTCGTTAtttttgtttttaaatttttCAATCCACAT-GTTTATACCT 3244 | | ||||||||||| | ||| | |||||||| ||| |||||| | ||| ||| Sbjct 2303184 AGCGGTATTTAGTTTTGCCTGCTTTATCTTTAAATTGTTCTGACCACATAATGTATTCCT 2303125 Query 3245 CCT----GTAGGAACGTACGTTC--TGTAAATTTGTAAAAAATAATAAGGGTAGGTGG-G 3297 ||| | ||||||| |||| | |||| | || ||||||| |||| || || Sbjct 2303124 CCTTACATTTAGAACGTAAGTTCAATATAAAGAT-TAGAAAATAAATAGGGCAGTAGGAA 2303066 Query 3298 CTACCCAAA 3306 || |||||| Sbjct 2303065 CTGCCCAAA 2303057 Score = 80.6 bits (88), Expect = 8e-11 Identities = 164/240 (68%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 2612 ATGTTATTATCGTTCAGTATAAAATCGCGTATCTGTATTACCTGTTCCATCTCTAAATAG 2671 ||||| || | ||| | |||||| || ||||| | || || || ||| || | |||| Sbjct 2303710 ATGTTTTT-TAGTTAA-TATAAATTCACGTATTTTTAACACTTGAATCATTTCAAGATAG 2303653 Query 2672 TTATACATTTTCGCTTCTTCTTTTTCTATATCTTCTATCGTCTTACTCTTCTTTGGTAGT 2731 ||||| ||||| |||||||||||| |||||||||| || ||| ||||| ||| | Sbjct 2303652 TTATATATTTTT--TTCTTCTTTTTCAATATCTTCTAGAGTTTTAGCTTTCTTAAGTACT 2303595 Query 2732 GTGACGCTATTTAATATGTGTTCGTTTGGATAATTGTAAAATTTAACGGCGTATTTAATA 2791 || |||||| || || | || | || | |||||||| || ||| | | Sbjct 2303594 TCTACATCATTTAACATATGCTTATTAGTGTATCTATAAAATTTCGTTGCATATGCTAAA 2303535 Query 2792 GCTTCTTTAATATGTCCAAGTTGACGCTTTACCTGATTTGCAGAATATACGTTTGATAAT 2851 |||| ||| |||| |||||| || | || || ||| | ||||| | || |||||| Sbjct 2303534 GCTTTTTTCATATCATTAAGTTGTCGTATAACTTGGTTTTCTGAATAAATTTTAGATAAT 2303475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152787856230828