Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq46 159 8e-34 >seq46 Length=4728336 Score = 159 bits (176), Expect = 8e-34 Identities = 176/233 (76%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || |||||||| |||||||| || | || |||||| || ||||| || ||| Sbjct 1479914 TGGCCTCCTCGGAGTCTCAGTACGAGGTGGAGAGTAGATTCTTTCTGAATATTGTAATCG 1479973 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| || || || ||||| | ||| || || || ||||| || | || ||| ||| Sbjct 1479974 GAGAGTGTACGACCATCTTCCAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGA---TCT 1480030 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| |||||||||||||| |||||||| ||||| |||||||| || | ||| | Sbjct 1480031 GGGGGAATTCCTTCTTTATCTTGGATTTTGGCTTTTACGTTTTCAATGGTATCTGATGGC 1480090 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| ||||| || || || |||| |||||||||||| |||||||| Sbjct 1480091 TCGACTTCGAGAGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 1480143 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| || || || ||||||| ||| |||||| ||||| ||||| || | Sbjct 1480600 TCCACCACGGAGCCTTAGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTATAATCAGA 1480659 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || |||||||| || || || || ||||| || | ||| || ||| Sbjct 1480660 AAGAGTGCGCCCATCTTCTAACTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGG 1480719 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| |||||||||||||| ||||||||||| || ||||| || | ||| | ||| || Sbjct 1480720 GATACCTTCTTTATCCTGAATTTTCGCTTTGACATTTTCAATCGTATCCGATGGTTCGAC 1480779 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || ||||||||||| || || | ||| || || || || ||||| Sbjct 1480780 TTCAAGAGTGATCGTCTTTCCTGTTAAAGTTTTCACAAAGATTTGCAT 1480827 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 ||||| |||| ||| ||||||||| ||||| ||||| | || |||||||| ||||| Sbjct 1480847 ACGAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCCGAAAGAGTGCGTCCATCTTCC 1480906 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 || |||||||| |||||||| | | ||||||| |||||| |||||||||||||| Sbjct 1480907 AACTGTTTTCCAGCGAAGATTAACCTCTGTTGATCTGGTGGGATGCCTTCTTTATCCTGA 1480966 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || || || || ||||| || | ||| | ||| || || || ||||| || || Sbjct 1480967 ATCTTGGCCTTAACATTTTCAATTGTGTCGGATGGTTCGACCTCAAGAGTGATGGTTTTG 1481026 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||| |||||| |||||||| ||||| Sbjct 1481027 CCTGTCAAAGTCTTTACGAATATTTGCAT 1481055 Score = 136 bits (150), Expect = 9e-27 Identities = 148/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || |||||||| | || || || || ||||| | |||||||| ||||| Sbjct 1481548 TTCTTTTTGAATGTTATAGTCAGAAAGGGTTCGACCATCTTCAAGCTGTTTTCCAGCGAA 1481607 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| | ||| ||| |||||| |||||||||||||| ||||| || || || || Sbjct 1481608 AATCAACCTCTGCTGA---TCTGGGGGGATTCCTTCTTTATCTTGGATCTTTGCCTTGAC 1481664 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| |||| ||| | |||||||| || || || ||||| ||||| | |||||| Sbjct 1481665 ATTTTCAATAGTGTCGGAAGGCTCTACTTCAAGTGTAATAGTCTTGCCGGTTAAAGTCTT 1481724 Query 288459 GACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 1481725 TACGAAGATCTGCAT 1481739 Score = 118 bits (130), Expect = 3e-21 Identities = 147/199 (74%), Gaps = 12/199 (6%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||| | ||||| || || || || | || ||||| ||||| Sbjct 1570220 TTCTTTTTGGATGTTGTAGTCAGAAAGCGTACGACCATCCTCGAGCTGCTTTCCGGCGAA 1570161 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| || |||||| |||||||| || || |||||||| ||||| || Sbjct 1570160 GATCAATCTCTGCTG---GTCTGGGGGAATTCCTTCCTTGTCTTGGATTTTAGCTTTGAC 1570104 Query 288399 GTTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 || || || | || |||| || ||||| | ||||| ||||| || || ||||| Sbjct 1570103 ATTGTCAATGGTGTC---CGATGGCTCAACTTCCAAAGTGATTGTCTTTCCAGTAAGAGT 1570047 Query 288456 CTTGACGAATATCTGCATT 288474 ||| ||||| ||||||||| Sbjct 1570046 CTTCACGAAGATCTGCATT 1570028 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||| | || || ||||| || || | || |||||||| || Sbjct 1570448 TTCTTTTTGGATGTTGTAGTCAGAAAGAGTACGTCCATCCTCGAGCTGCTTTCCTGCAAA 1570389 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| || |||||| |||||||| || || ||||| || || || || Sbjct 1570388 GATCAATCTCTGCTG---GTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTGAC 1570332 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | |||| | ||| ||||| | ||||| ||||| || || || ||||| Sbjct 1570331 ATTCTCAATGGTATCGGATGGTTCAACTTCCAAGGTGATGGTCTTTCCAGTAAGGGTCTT 1570272 Query 288459 GACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 1570271 CACGAAGATCTGCAT 1570257 Score = 111 bits (122), Expect = 4e-19 Identities = 167/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || | ||| || | || ||||||| ||| |||||| ||||| || || | Sbjct 1480141 CATG-CCGCCTCTGAGCCTCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAAT 1480199 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || |||||||||||||| ||||| ||||| || || || | | ||| || | Sbjct 1480200 CCGAAAGTGTGCGTCCGTCTTCCAATTGCTTTCCAGCAAAAATTAACCTCTGCTG---GT 1480256 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||| ||||| |||||||| || || ||||| || || || || | || | Sbjct 1480257 CTGGAGGGATCCCTTCCTTATCCTGAATCTTAGCTTTGACATTATCAATGGTGTCAGATG 1480316 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| ||||| ||||| || || | ||| || || || || ||||| Sbjct 1480317 GCTCGACTTCGAGGGTGATTGTCTTTCCTGTTAAAGTTTTCACAAAGATTTGCAT 1480371 Score = 104 bits (114), Expect = 6e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | ||| || | || || |||| || |||||| || || || ||||||| Sbjct 1463655 TCCACCTCTGAGCCTCAAGACAAGGTGAAGTGTCGATTCTTTCTGAATGTTGTAGTCGGA 1463714 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || ||||| | |||||| || || ||||| || | || ||| ||||| Sbjct 1463715 AAGAGTTCGACCATCTTCAAGTTGTTTACCGGCAAAGATAAGCCTTTGCTGA---TCTGG 1463771 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||||||||||||||| || |||||||| ||||| || | || | ||| Sbjct 1463772 AGGAATACCTTCTTTATCCTGGATCTTAGCTTTCACATTTTCAATTGTGTCAGATGGTTC 1463831 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||| | || || || || || || | || || || || || |||||| Sbjct 1463832 TACTTCCAAAGTAATTGTTTTACCAGTTAAGGTTTTAACAAAGATTTGCATT 1463883 Score = 104 bits (114), Expect = 6e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||| || | || ||||||| || |||||| || || ||||| || | Sbjct 1463883 TCCGCCTCTGAGCCTCAAGACAAGATGAAGTGTTGATTCTTTCTGAATGTTATAATCCGA 1463942 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||| ||||| || |||||||| |||||||| | | ||||||| ||| Sbjct 1463943 AAGAGTGCGTCCATCTTCCAACTGTTTTCCGGCGAAGATTAACCTCTGTTGATCTGGTGG 1464002 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTAT 288407 ||| |||||||||||||| || || || || || ||||| || Sbjct 1464003 GATGCCTTCTTTATCCTGAATCTTGGCCTTAACATTTTCAAT 1464044 Score = 102 bits (112), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||||||||| || || | | || || || ||||| | |||||| || || || Sbjct 1480408 TTCTTTTTGGATATTGTAATCTGATAATGTACGACCATCTTCAAGTTGTTTGCCGGCAAA 1480467 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| | ||| || |||| ||||| |||||||| || || ||||| ||||| || Sbjct 1480468 AATCAATCTCTGCTG---ATCTGGAGGGATACCTTCTTTGTCTTGAATTTTAGCTTTTAC 1480524 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | ||| | ||| ||||| | ||||| || ||||| || | || || Sbjct 1480525 GTTTTCAATTGTATCAGAAGGTTCGACTTCCAAGGTGATTGTTTTCCCTGTTAATGTTTT 1480584 Query 288459 GACGAATATCTGCATT 288474 || || || |||||| Sbjct 1480585 CACAAAGATTTGCATT 1480600 Score = 102 bits (112), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || ||||| || | ||| || | || || || | ||| || || ||||| Sbjct 1481776 TTCCTTTTGAATGTTATAATCCGAGAGAGTTCTACCATCCTCAAGTTGCTTGCCAGCGAA 1481835 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||||| ||||| ||| |||||||| ||||||||||| || ||||| Sbjct 1481836 AATCAGCCTTTGTTGG---TCTGGCGGGATACCTTCTTTGTCCTGGATTTTGGCCTTCAC 1481892 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | ||| | || ||||| | ||||| || || ||||||| ||| || Sbjct 1481893 ATTCTCAATTGTATCTGAAGGCTCAACTTCCAATGTGATGGTTTTTCCGGTCAAAGTTTT 1481952 Query 288459 GACGAATATCTGCATT 288474 || || ||||||||| Sbjct 1481953 CACAAAGATCTGCATT 1481968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179633209720556