Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq46 104 2e-17 >seq46 Length=4728336 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | | ||| ||||| | | || |||||||||||||| || || Sbjct 1481057 CCTCCTCTCAACCTGAGAACCAAATGCAAAGTCGATTCCTTTTGAATGTTATAATCTGAG 1481116 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||||||||||| |||| | | || || | ||| ||||| || || Sbjct 1481117 AGCGTACGCCCATCCTCGAGTTGTTTTCCGGCAAAAATCAGCCTCTGCTGGTCTGGGGGA 1481176 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||||| ||| | | ||| | ||||| | | ||| || Sbjct 1481177 ATGCCTTCTTTGTCTTGTATTTTAGCTTTGACATTTTCAATAGTGTCTGATGGCTCGACT 1481236 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || |||||||| |||||||| ||||| Sbjct 1481237 TCTAAAGTTATGGTCTTTCCGGTTAGAGTTTTAACAAAAATTTGCAT 1481283 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || ||||||||||||||| | ||| || || || ||||||||||||| | Sbjct 1463689 GATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCGACCATCTTCAAGTTGTTTACCGGCA 1463748 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || || || ||||| ||||||||||| || ||| || ||| | Sbjct 1463749 AAGATAAGCCTTTGCTGATCTGGAGGAATACCTTCTTTATCCTGGATCTTAGCTTTCACA 1463808 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | | || || || | || | ||||||||||| | ||||| Sbjct 1463809 TTTTCAATTGTGTCAGATGGTTCTACTTCCAAAGTAATTGTTTTACCAGTTAAGGTTTTA 1463868 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 1463869 ACAAAGATTTGCAT 1463882 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | |||||| | || | | | || || ||||| ||||||||||| Sbjct 1570255 CCTCCTCTCAACCTCAAAACAAGGTGGAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAA 1570196 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||||| || || |||| |||| | | ||| ||||| || || Sbjct 1570195 AGCGTACGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGA 1570136 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| ||| | |||| || | |||||| | | ||| || Sbjct 1570135 ATTCCTTCCTTGTCTTGGATTTTAGCTTTGACATTG-TCAATGGTGTCCGATGGCTCAAC 1570077 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || || || |||||||| Sbjct 1570076 TTCCAAAGTGATTGTCTTTCCAGTAAGAGTCTTCACGAAGATCTGCAT 1570029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496253703001440