Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq157 145 3e-30 >seq157 Length=245904 Score = 145 bits (160), Expect = 3e-30 Identities = 91/98 (93%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 24181 AGAGCCTGTAACTGTTTTCCGTCCATAAATTAACCTTCATTTGATGCTGGATTGAACATA 24240 |||||||| ||||||||| |||||||||| |||||| | ||||||| ||||||||||||| Sbjct 91021 AGAGCCTGCAACTGTTTTTCGTCCATAAAGTAACCTGCTTTTGATGTTGGATTGAACATA 91080 Query 24241 TCAAAATCAGGCAATTACACAAATCTATGTACAGGCTC 24278 |||||||||||||||||||||||| ||||||||||||| Sbjct 91081 TCAAAATCAGGCAATTACACAAATTTATGTACAGGCTC 91118 Score = 145 bits (160), Expect = 3e-30 Identities = 91/98 (93%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 24181 AGAGCCTGTAACTGTTTTCCGTCCATAAATTAACCTTCATTTGATGCTGGATTGAACATA 24240 |||||||| ||||||||| |||||||||| |||||| | ||||||| ||||||||||||| Sbjct 128189 AGAGCCTGCAACTGTTTTTCGTCCATAAAGTAACCTGCTTTTGATGTTGGATTGAACATA 128248 Query 24241 TCAAAATCAGGCAATTACACAAATCTATGTACAGGCTC 24278 |||||||||||||||||||||||| ||||||||||||| Sbjct 128249 TCAAAATCAGGCAATTACACAAATTTATGTACAGGCTC 128286 Score = 91.5 bits (100), Expect = 6e-14 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 12158 AATCTTAAGAAATGGAACGAACAAGTTACAGCAAACTATCACAGCGCGACGTTGATCGCG 12217 ||| |||| ||||||| | |||| |||||||||| ||||| | || ||||||| | Sbjct 39992 AATATTAACAAATGGATAGTACAAACTACAGCAAACCGTCACAACAGGAAATTGATCGTG 40051 Query 12218 CAGAAACAGATTTACTCATCAACCTGTCAACGCTTACACAGCGCGGTCTGGCAAAGATGA 12277 | ||||| || || ||||||| ||| || | || || |||| | || || | Sbjct 40052 CTGAAACGGACTTGCTCATCATCCTTTCCAAACTGACCGGGCGCAAGTTCGCGGAGTTTG 40111 Query 12278 TTGGCTGTCATGAATCGAAGATAAGCAGAACGGACTGGCGGTTTATTGCTTCGGTCTTGT 12337 || |||||||||||||| || || | || |||||||| ||||| || | || |||| Sbjct 40112 CCGGGTGTCATGAATCGAAAATCAGTCGCACCGACTGGCGCTTTATCGCCACTGTTTTGT 40171 Query 12338 GTG 12340 ||| Sbjct 40172 GTG 40174 Score = 82.4 bits (90), Expect = 3e-11 Identities = 192/290 (66%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 19780 CAAATCAAATACGCCAGCACACGACAAGGACTGCTGGCAAACGCCGCTCTGGCTTTTTGA 19839 ||||||| | || | || | |||||||| |||| || |||| | | | || | Sbjct 44988 CAAATCACACACCAGACCAGAGCACAAGGACACATGGCGCACACCGCCCGAGGTCTTCCA 45047 Query 19840 TGCGCTGGATATTGAGTTTGGATTCTGGCTGGATTCAGCTGCGAGCGACAAAAACGCTCT 19899 ||||||||| |||||||| |||| || ||| | || || | || | || || || Sbjct 45048 GGCGCTGGATGCGGAGTTTGGCTTCTACCTCGATGCCGCCGCTGACCACGACAATGCCCT 45107 Query 19900 GTGCGCTCACTGGCTAACTGAGGCTGACGACGCGCTAAATTCTGAGTGGATAAGCCACGG 19959 |||| || | || || | | || || || || | ||| |||| ||| |||| Sbjct 45108 GTGCCGTCTGTATCTGACGCAAGAGGATGATGCCCTTGCCTGTGACTGGAGTAGCAACGG 45167 Query 19960 TGCAATCTGGAATAACCCACCGTACAGCAATATCAGGCCGTGGGTGGAAAAAGCCGCTGA 20019 || |||| || || ||||||||||||||| | || ||||| || ||||| ||||| Sbjct 45168 AGCCATCTTCTGCAATCCCCCGTACAGCAATATCCGCCCCTGGGTTGATAAAGCTGCTGA 45227 Query 20020 GCAGTGCATACAACAGCGACAGACGGTAGTGATGCTTGTGCCAGAGGATA 20069 |||| || | ||| | ||||| || ||||| |||| | |||| Sbjct 45228 GCAGAGCCGCAAGCAGAATAAAACGGTCGTTATGCTGCTGCCTGCTGATA 45277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198742204058776