Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq46 105 6e-18 >seq46 Length=4728336 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| |||||| | || | || || ||||||||||| || || || | || ||| Sbjct 1481522 AATCTCAACACAAGGTGGAGGGTTGATTCTTTTTGAATGTTATAGTCAGAAAGGGTTCGA 1481581 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || ||||||||||||||| | ||||| | ||||||||| || || || || || Sbjct 1481582 CCATCTTCAAGCTGTTTTCCAGCGAAAATCAACCTCTGCTGATCTGGGGGGATTCCTTCT 1481641 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 || || ||| || ||||| | ||| | ||||| | | ||| ||||| | || Sbjct 1481642 TTATCTTGGATCTTTGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACTTCAAGTGTA 1481701 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || |||||||| | ||| ||||| || |||||||| Sbjct 1481702 ATAGTCTTGCCGGTTAAAGTCTTTACGAAGATCTGCAT 1481739 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| ||||||||||| | || ||| ||| || || ||||| || Sbjct 1480403 GTGGATTCTTTTTGGATATTGTAATCTGATAATGTACGACCATCTTCAAGTTGTTTGCCG 1480462 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || | ||||||| ||||||||| ||||| || || || |||| | ||| ||| || || Sbjct 1480463 GCAAAAATCAATCTCTGCTGATCTGGAGGGATACCTTCTTTGT-CTTGAATTTTAGCTTT 1480521 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||| | || || | | |||||||| | ||| | ||||| || || | || Sbjct 1480522 TACGTTTTCAATTGTATCAGAAGGTTCGACTTCCAAGGTGATTGTTTTCCCTGTTAATGT 1480581 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| ||||| || ||||| Sbjct 1480582 TTTCACAAAGATTTGCAT 1480599 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||||||||||||||| || | ||||| ||| || | |||||||||| Sbjct 1480859 GTGGATTCTTTTTGAATATTGTAGTCCGAAAGAGTGCGTCCATCTTCCAACTGTTTTCCA 1480918 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| || | ||| ||||| || || ||||| || || ||| || || ||| Sbjct 1480919 GCGAAGATTAACCTCTGTTGATCTGGTGGGATGCCTTCTTTATCCTGAATCTTGGCCTTA 1480978 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||||| | ||||| || | || | |||||||| |||| ||| Sbjct 1480979 ACATTTTCAATTGTGTCGGATGGTTCGACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTC 1481038 Query 127097 TTTACAAAAATCTGCAT 127113 ||||| || || ||||| Sbjct 1481039 TTTACGAATATTTGCAT 1481055 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| ||||||||||||||| | || ||| ||| || || || || || Sbjct 1479947 GTAGATTCTTTCTGAATATTGTAATCGGAGAGTGTACGACCATCTTCCAGTTGCTTGCCG 1480006 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||||| || || || || || || || |||||| || Sbjct 1480007 GCAAAGATGAGCCTTTGCTGATCTGGGGGAATTCCTTCTTTATCTTGGATTTTGGCTTTT 1480066 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||| || | ||||||||||| || | |||||||| |||| ||| Sbjct 1480067 ACGTTTTCAATGGTATCTGATGGCTCGACTTCGAGAGTGATGGTTTTGCCAGTCAAAGTC 1480126 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 1480127 TTGACGAAGATCTGCATG 1480144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475492466848480