Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_012663.1 Length=60074 Score E Sequences producing significant alignments: (Bits) Value seq570 129 2e-25 >seq570 Length=38645 Score = 129 bits (142), Expect = 2e-25 Identities = 597/924 (65%), Gaps = 30/924 (3%) Strand=Plus/Plus Query 17766 CAAATAATGCTATACGAAAATATCACAGAAACTATCGGAAACACACCACTTGTTAAATTA 17825 ||||||| | || || |||||| | || || ||||||||||| | ||||||||| Sbjct 32481 CAAATAAACCAGTA-GACAATATCGTACAAGTGATTGGAAACACACCTGTAGTTAAATTA 32539 Query 17826 CACCCTGTATCACTCAATGGAGATATTGCTGATGTTTATGTTAAACTAGAAAGCTTCAAC 17885 || || | | | || | ||| || |||||||| ||||| ||| || Sbjct 32540 AACAACGTTGTAG---AGGAAGGTGCTGCAGACGTTTATGTAAAACTTGAATATCAAAAT 32596 Query 17886 CCTGGAGGTTCGGTCAAAGACCGTATTGCTTTGAAAATGATTCAACAAGCACACAAGATT 17945 || || ||||| || ||||||||||| || || |||||| || |||| | || Sbjct 32597 CCAGGCGGTTCTGTAAAAGACCGTATCGCGTTAGCTATGATTGAAGAAGCTGAAAAAGAA 32656 Query 17946 GGACAACTTAAAGAAGAACAAGCTATTGTAGAACCAACCTCTGGTAATACTGGAATCGGT 18005 || || |||| | | | || || |||||||| ||| |||||||| |||||| Sbjct 32657 GGCAAAATTAAGCCTGGCGATACAATCGTTGAACCAACAAGTGGAAATACTGGTATCGGT 32716 Query 18006 TTAGCTATGGTTGGAGCAGCTCTTGGACATCCAGTTACTATTGTAATGCCAGAATC-ATT 18064 ||||| | ||| | |||||| || || || | || |||||| ||| | || Sbjct 32717 TTAGCATTTGTTTGTGCAGCTAAAGGCTATAAAGCTGTATTTACAATGCCTGAAACGATG 32776 Query 18065 CTCTATGGAACGTAGACAAATTATCCGT-GCTTATGGTGCTAACTTAGTTTTAACACCTG 18123 | | | ||||| | || |||| || || || || | ||||| |||||||||| Sbjct 32777 AGCCAAG-AACGTCGT-AACTTATTAAAAGCATACGGCGCAGAGTTAGTATTAACACCTG 32834 Query 18124 CTAGTGAAGGAATGAAAGGTGCTATCGCTAAAGCCAAAGAAATTGCCA-AAGATATTAAC 18182 | |||| ||||||||||| ||| ||||| |||||| ||| | |||| || Sbjct 32835 GTTCAGAAGCTATGAAAGGTGCAATCAAGAAAGCTAAAGAA-TTGAAAGAAGAGTTTGGT 32893 Query 18183 GGATTTATACCAATGCAATTTGAGAACTTCTGG-AATCCTACAGCTCATTTTGA--TAAC 18239 ||| |||| ||||| || || | | | || ||| | || || |||| Sbjct 32894 TACTTTGAACCACAACAATTCGAAAA-TCCAGCTAACCCTCGTGTACAC---GAATTAAC 32949 Query 18240 A-CAGCTTTTGAAATCATTGATGAACTTACTAAAAGTGGTAAACGTCCAGATATGTTTGT 18298 | | | ||| | |||| || || ||| ||||| ||| || | Sbjct 32950 AACTGGACCAGAATTAGTTGAACAATTTG----AAG--GTAAAACAATTGATTCATTCTT 33003 Query 18299 AGCAGGAGTTGGAACTGGTGGCACTATTACTGGAGCAGGTCATTCACTCAAAGAAGAATT 18358 ||| || || || |||||||| || | | ||| ||||| | | ||||| | | Sbjct 33004 AGCTGGTGTCGGCACTGGTGGAACATTAAGTGGCGCAGGCAAAGTGTTAAAAGAGCAGTA 33063 Query 18359 TCCTAGCATTAAAATTGTTGGAGTTGAATCAGCAGAATCACCAGTACTTAGTGGAGGAGA 18418 || | ||||| |||| | | ||||| ||| ||| || || ||| | ||||| ||||| Sbjct 33064 CCCAAATATTAATCTTGTAGCAATTGAACCAGAAGACTCTCCGGTATTAAGTGGTGGAGA 33123 Query 18419 ACCTGGACCACATAAGATTCAAGGTATTTCAGCAGGTTTTATTCCACAAATTCTTGATAT 18478 |||||| || ||||| | |||||| | ||||| ||||||||| | | | | ||| Sbjct 33124 ACCTGGTCCTCATAAACTACAAGGTTTAGGTGCAGGATTTATTCCAGATACTTTAGATGA 33183 Query 18479 GGATATCATTGATGAAATCAAACAAGTATCGAGTGAACAAGCTCTTGATACAGCTCGTAG 18538 ||||| |||||||| | |||||| | ||| |||| | || | || |||| Sbjct 33184 AAATATCTACGATGAAATTATTCAAGTAGGTAACGAAACAGCTATGGAAATGGCACGTAA 33243 Query 18539 TATGGCTTTGAATGAAGGTATCTTAGTTGGAATCAGTAGTGGAGCAGCTATCTCA-GCAG 18597 | ||| | |||||||||||| ||| || | || ||||| || ||| |||| Sbjct 33244 AGTTGCTAAAGAAGAAGGTATCTTATGTGGTATTTCTTCAGGTGCAGCGAT-TCATGCAG 33302 Query 18598 CTTTTGATAAGGCTAAAGAATTAGGCAAAGGTAAAACTATTG-TAGT-AATTGCACCAGA 18655 | |||| ||||||||| | |||| ||||||||| ||| || | ||| |||| Sbjct 33303 CCATTGAAAAGGCTAAAAACCTAGGTGCAGGTAAAACAGTTGTTACTGTATT--ACCAAG 33360 Query 18656 TACTGGAGAACGCTATTTATCAAC 18679 || ||| ||||| || |||||||| Sbjct 33361 TAATGGTGAACGTTACTTATCAAC 33384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192112001522064